View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12633_low_1 (Length: 421)
Name: NF12633_low_1
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12633_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 48960449 - 48960633
Alignment:
| Q |
18 |
aggtgaaaactgttctataaataaaacacagcctcttccatatttttgtgtgctcattttttgtctcctccatttttcagtttacaacttctcttcacaa |
117 |
Q |
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| T |
48960449 |
aggtgaaaactgttctataaataaaacacagcctcttccatatttttgtgtgctcattttttgtctcctccatatttcagtttacaacttctcttcacaa |
48960548 |
T |
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| Q |
118 |
acttttaacatttccccaacaaagaaacaccatggctaacccacccccggttcgtccatggttccgcttaacctccattcgcccc |
202 |
Q |
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| T |
48960549 |
acttttaacatttccccaacaaagaaacgccatggctaacccacccccggttcgtccatggttccgcttaacctccattcgcccc |
48960633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 270 - 412
Target Start/End: Original strand, 48960713 - 48960855
Alignment:
| Q |
270 |
gccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcagactcaacctcaagaaaagaaaacagaacaaacattttc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
48960713 |
gccctactatgtctctacccacatttaggactgcttcagcacccccatcacctcataatcaaactcaacctcaagaaaagaaaacagaacaaacactttc |
48960812 |
T |
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| Q |
370 |
atctccacctcataggggcttgtttcctaattcttcttcatct |
412 |
Q |
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| T |
48960813 |
atctccacctcataggggcttgtttcccaattcttcttcatct |
48960855 |
T |
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