View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12633_low_2 (Length: 421)
Name: NF12633_low_2
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12633_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 7739310 - 7739711
Alignment:
| Q |
1 |
attatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacggtagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
7739310 |
attatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactgggaaagagacggtagg |
7739409 |
T |
|
| Q |
101 |
gagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739410 |
gagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccac |
7739509 |
T |
|
| Q |
201 |
taagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgagag |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
7739510 |
taagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttaggaattggcccagttactttgggcatttcggccaatgagag |
7739609 |
T |
|
| Q |
301 |
gaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggggt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
7739610 |
gaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggt |
7739709 |
T |
|
| Q |
401 |
tt |
402 |
Q |
| |
|
|| |
|
|
| T |
7739710 |
tt |
7739711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 7726992 - 7727394
Alignment:
| Q |
1 |
attatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacggtagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
7726992 |
attatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcgaaagagacggtatg |
7727091 |
T |
|
| Q |
101 |
gagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccac |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
7727092 |
gagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggatcggcccac |
7727191 |
T |
|
| Q |
201 |
taagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgagag |
300 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||| || || || ||||||||||||||||| ||||||||||| |
|
|
| T |
7727192 |
taagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccggttactttgggcatttcagccaatgagag |
7727291 |
T |
|
| Q |
301 |
gaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggggt |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7727292 |
gaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggt |
7727391 |
T |
|
| Q |
401 |
ttg |
403 |
Q |
| |
|
||| |
|
|
| T |
7727392 |
ttg |
7727394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 7731152 - 7731553
Alignment:
| Q |
1 |
attatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacggtagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7731152 |
attatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcgaaagagacggtatg |
7731251 |
T |
|
| Q |
101 |
gagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7731252 |
gagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtggggatcggcccac |
7731351 |
T |
|
| Q |
201 |
taagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgagag |
300 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||| |||| || |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
7731352 |
taagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagggattggcccagttactttcggcatttcggctaatgagag |
7731451 |
T |
|
| Q |
301 |
gaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccaggtaggggt |
400 |
Q |
| |
|
|||||||||||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7731452 |
gaagttaagataagggaggtcgccaaactctactggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcggccaggtaggggt |
7731551 |
T |
|
| Q |
401 |
tt |
402 |
Q |
| |
|
|| |
|
|
| T |
7731552 |
tt |
7731553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 7713475 - 7713867
Alignment:
| Q |
1 |
attatgatcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacggtagg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
7713475 |
attatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcgaaagagactgtagg |
7713574 |
T |
|
| Q |
101 |
gagccgaacgacgccggaataacaccggttaacttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccac |
200 |
Q |
| |
|
| ||| ||||||||||||| |||||| |||||||||||| |||||||||| ||| || | || |||||||| ||| || || ||||| | ||||| |
|
|
| T |
7713575 |
ttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattcagggattggcccac |
7713674 |
T |
|
| Q |
201 |
taagactgttggaaccaaggtcgagtctttgtagtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgagag |
300 |
Q |
| |
|
|||| |||||||| ||||||||||| ||| |||||||| |||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
7713675 |
taaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagagttagggattggcccagttactttcggcatttcggccaatgagag |
7713774 |
T |
|
| Q |
301 |
gaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccagg |
393 |
Q |
| |
|
| | ||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
7713775 |
catgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcggccagg |
7713867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 393
Target Start/End: Original strand, 7699162 - 7699522
Alignment:
| Q |
33 |
tcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacggtagggagccgaacgacgccggaataacaccggttaa |
132 |
Q |
| |
|
||||||||| ||| || |||||||| || ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||| |||| ||| |
|
|
| T |
7699162 |
tcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataa |
7699261 |
T |
|
| Q |
133 |
cttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccactaagactgttggaaccaaggtcgagtctttgt |
232 |
Q |
| |
|
|||||||||||||||||||| ||||| || || |||||||| |||||| || | |||||| | ||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
7699262 |
cttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggaggggattggcccactaaggctgttggaaccaaggtctagattttgt |
7699361 |
T |
|
| Q |
233 |
agtctttggagtttgctgaaagagctaggaataggcccagttactttgggcatttcggccaatgagaggaagttaagatatggaaggtcgccaaactccg |
332 |
Q |
| |
|
||||||||||||||||| |||||| |||| || |||||||||||||| |||||||||||||||||||| | | ||||||| || |||| ||||||||||| |
|
|
| T |
7699362 |
agtctttggagtttgctaaaagagttagggattggcccagttactttcggcatttcggccaatgagagcatgctaagataagggaggttgccaaactccg |
7699461 |
T |
|
| Q |
333 |
ctggtagcgtaccggaaagaccccagccacggctgatggtgaccacggtgattcggccagg |
393 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
7699462 |
ctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcggccagg |
7699522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 12908312 - 12908070
Alignment:
| Q |
33 |
tcaacccagtagggatcgcaccacatagttggttaaagctgacattaaactgcgaaagagacggtagggagccgaacgacgccggaataacaccggttaa |
132 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||| |||| ||||| ||||| || ||||||||||||| | ||| |||||| ||||||||||||| ||| |
|
|
| T |
12908312 |
tcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactgggagagagacggtagggtggcgagcgacgctggaataacaccggataa |
12908213 |
T |
|
| Q |
133 |
cttgttgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtggggatcgacccactaagactgttggaaccaaggtcgagtctttgt |
232 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| ||||||| |||||||||| |||||||||| |||||||| ||||||| ||| | ||| ||| | |
|
|
| T |
12908212 |
cttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtggggatcgggccactaaggttgttggagttaagtttgaggcttcgc |
12908113 |
T |
|
| Q |
233 |
agtctttggagtttgctgaaagagctaggaataggcccagtta |
275 |
Q |
| |
|
| | ||| |||||||||||||||| |||| || |||||||||| |
|
|
| T |
12908112 |
aattttttgagtttgctgaaagagttagggattggcccagtta |
12908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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