View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12633_low_5 (Length: 334)
Name: NF12633_low_5
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12633_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 1044105 - 1044403
Alignment:
| Q |
20 |
gtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaa |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1044105 |
gtcgatttcctttggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagcgg |
1044204 |
T |
|
| Q |
120 |
agactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1044205 |
agactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcagct |
1044304 |
T |
|
| Q |
220 |
gatgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
1044305 |
tctgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatc |
1044403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 1033730 - 1034017
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaaagactccaatcc |
131 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||| || ||||| || |||||||||||| |
|
|
| T |
1033730 |
tggaagttgttgacgctgttgtgaatgagataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcc |
1033829 |
T |
|
| Q |
132 |
caatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgatt |
231 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1033830 |
cacagaattgggactttatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgatt |
1033929 |
T |
|
| Q |
232 |
gaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggatca |
319 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1033930 |
gaaagcccttacagtctggtgcccatgagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatca |
1034017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 1065720 - 1066019
Alignment:
| Q |
20 |
gtcgatttcctctggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaa |
119 |
Q |
| |
|
|||||||| || |||||||||||||||| |||| ||||||||||||||||| | ||||||||| ||| ||||||||||||| || ||||||||| || |
|
|
| T |
1065720 |
gtcgatttgctttggaagttgttgaagctgttgcaaatgagataggagcagaaagagttggaataagattatcaccttttgcggagtatgcagaatgtgg |
1065819 |
T |
|
| Q |
120 |
agactccaatcccaatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaat |
219 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||| ||| | | |
|
|
| T |
1065820 |
agactccaaccccaatgaattgggactttatatggtcaatgccctcaataaatatggtattctttactgtcatatggtggaaccaagaatgaaaactgtt |
1065919 |
T |
|
| Q |
220 |
gatgaaacgattgaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggatca |
319 |
Q |
| |
|
| ||||| | |||| |||| |||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
1065920 |
ggtgaaaaaactgaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatca |
1066019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 1071459 - 1071746
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaaagactccaatcc |
131 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||| | ||||||||| ||| |||||||||||||||| ||| ||||| || ||||||||| || |
|
|
| T |
1071459 |
tggaagttgttgaagctgttgcaaatgagataggaacagaaagagttggaataagattatcaccttttgcagagtattcagaatgtggagactccaaccc |
1071558 |
T |
|
| Q |
132 |
caatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgatt |
231 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| | | | || ||||| | | |
|
|
| T |
1071559 |
taaagaattgggactttatatggttaatgccctcaataaatacggtattctttattgtcacatggtggaaccaagaatgataactgttggtgaaaaaact |
1071658 |
T |
|
| Q |
232 |
gaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggatca |
319 |
Q |
| |
|
||| |||| |||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
1071659 |
gaatgccccgacagccttgtgccaatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatca |
1071746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 317
Target Start/End: Complemental strand, 1640826 - 1640541
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaaagactccaatcc |
131 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| ||||| |||||||||| |||| || |||||||||||| |
|
|
| T |
1640826 |
tggaaattgttgaagcagttgtgaatgagataggtgcagaaagagttggaattagattatcgcctttcgcagaatatggagaatgtggagactccaatcc |
1640727 |
T |
|
| Q |
132 |
caatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgatt |
231 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| | | | ||||| || |
|
|
| T |
1640726 |
tgaagaattggggctttatatggttaatgccctcagtaaatacaatattctttactgtcacatggtggaaccaagaatgaaaactattactgaaaaagtt |
1640627 |
T |
|
| Q |
232 |
gaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggat |
317 |
Q |
| |
|
||| | | | |||| |||||||||||||||| || |||||||| ||||| || ||||| ||||| ||| ||||||||||||| |
|
|
| T |
1640626 |
gaatgtcttcacagcttggtgccaatgagaaaagccttcaatggaacttttatagttgccggaggctattcgcgacaagatgggat |
1640541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 1058640 - 1058927
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaaagactccaatcc |
131 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| ||||||| | |||||||||| ||||||||||| |||||||||||||| || |||||| ||||| |
|
|
| T |
1058640 |
tggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactctaatcc |
1058739 |
T |
|
| Q |
132 |
caatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgatt |
231 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| ||| | | |||||| ||| |
|
|
| T |
1058740 |
cagagaattgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaatt |
1058839 |
T |
|
| Q |
232 |
gaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggatca |
319 |
Q |
| |
|
||| || || |||| || ||||| ||||||||||| ||||| ||||||||| ||| |||||||||||| ||| || | |||||||||| |
|
|
| T |
1058840 |
gaatgctctcacagccttgtgccgatgagaaaggccttcaaaggcactttcctggctgcaggaggttacgaccgaaatgatgggatca |
1058927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 319
Target Start/End: Original strand, 1053375 - 1053662
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaaagactccaatcc |
131 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||| ||||| | ||||||||| | | |||||||||||| | ||| || ||| || |||||| ||||| |
|
|
| T |
1053375 |
tggaaattgttgaagctgttgcaaatgagataggtgcagaaagagttggaataaaattatcaccttttgaaaaatttggagattgtggagactcaaatcc |
1053474 |
T |
|
| Q |
132 |
caatgaattgggacttcatatggttaatgccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgatt |
231 |
Q |
| |
|
| | |||||||||||| ||||||| |||||||||||||| || ||||||||| ||||| ||||||||||||||||| || |||||| | | | |
|
|
| T |
1053475 |
ccaagaattgggactttatatggtgaatgccctcaataaatatggtattctttattgtcatatggtggaaccaagaatggaaattcttgatgagaaaact |
1053574 |
T |
|
| Q |
232 |
gaaagcccttacagtctggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggatca |
319 |
Q |
| |
|
||| | | ||| || ||||| |||| ||||||| ||||||||| ||||| |||||| | ||||| ||||| ||||||||||| |||| |
|
|
| T |
1053575 |
gaatgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatca |
1053662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 1046919 - 1046990
Alignment:
| Q |
248 |
tggtgccaatgagaaaggctttcaatggcactttcatggttgcaggaggttatgacagacaagatgggatca |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||| | ||||| |||| ||| ||||||| |
|
|
| T |
1046919 |
tggtgccagtgagaaaggctttcaatggcactttcatggttaccggaagctatgaaagactagacgggatca |
1046990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 1046700 - 1046838
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagtaaagactccaatcc |
131 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| || || || | ||||||||| | ||||||||||||| |||| | | |||| || |||||| ||||| |
|
|
| T |
1046700 |
tggaaattgttgaagctgttgtaaatgagattggtgccgaaagagttggaataaaactatcacctttttcagatttcgaagaatgtggagactcaaatcc |
1046799 |
T |
|
| Q |
132 |
caatgaattgggacttcatatggttaatgccctcaataa |
170 |
Q |
| |
|
|| | |||||| ||| | |||||||||||||||||||| |
|
|
| T |
1046800 |
gaaggcattggggctttacatggttaatgccctcaataa |
1046838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 44171317 - 44171262
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattaga |
87 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44171317 |
tggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattaga |
44171262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 44191613 - 44191558
Alignment:
| Q |
32 |
tggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattaga |
87 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44191613 |
tggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattaga |
44191558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University