View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12633_low_6 (Length: 313)

Name: NF12633_low_6
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12633_low_6
NF12633_low_6
[»] chr4 (1 HSPs)
chr4 (19-308)||(7332746-7333043)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 7332746 - 7333043
Alignment:
Q  19 tttgaaagaaacacattgaatgaatgatgaatcagaagggtttgtaactaaatcgttaccttttggaagagaatattcttccttgcacttgtccatgaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7332746 tttgaaagaaacacattgaatgaatgatgaatcagaagggtttgtaactaaatcgttaccttttggaagagaatattcctccttgcacttgtccatgaat 7332845  T
Q  119 gaggaaaaaggtgacaccaagaaattaagctcttaactaattcttgctttgttttaatttattttataaatctctgaagtgtaggagcagaaagtggatc 218  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7332846 gaggataaaggtgacaccaagaaattaagctcttaactaattcttgctttgttttaatttattttataaatctctgaagtataggagcagaaagtggatc 7332945  T
Q  219 aggtgcataatg--------aggttgattggttgttttaccaaatacaaagtcaaagacaacatatattcacaccaatgttctcggcttcttctctct 308  Q
    ||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7332946 aggtgcataatgataaataaaggttgattcgttgttttaccaaatacaaagtcaaagacaacatatattcacaccaatgttctcggcttcttatctct 7333043  T

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