View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12633_low_7 (Length: 291)
Name: NF12633_low_7
Description: NF12633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12633_low_7 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 32457353 - 32457089
Alignment:
| Q |
20 |
ttagaaagagcagccactgtctatggcaactccatttccatcatatacaacaacacttcattcacttggtctcaaacccacaaaagatgtcttcaacttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32457353 |
ttagaaagagcagccactgtctatggcaactccatttcaatcatatacaacaatacctcattcacttggtctcaaacccacaaaagatgtcttcaacttg |
32457254 |
T |
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| Q |
120 |
cttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32457253 |
cttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttcccccaacactccggccatgtacgagcttcatttctccgttccaat |
32457154 |
T |
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| Q |
220 |
gtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccgttcatctca |
284 |
Q |
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| T |
32457153 |
gtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccgttcttctca |
32457089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 32463782 - 32464040
Alignment:
| Q |
20 |
ttagaaagagcagccactgtctatggcaactccatttccatcatatacaacaacacttcattcacttggtctcaaacccacaaaagatgtcttcaacttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32463782 |
ttagaaagagcagccactgtctatggcaactccatttcaatcatatacaacaatacctcattcacttggtctcaaacccacaaaagatgtcttcaacttg |
32463881 |
T |
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| Q |
120 |
cttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaat |
219 |
Q |
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| T |
32463882 |
cttcatcactttcttccctcggcatccaaaaaggcgacgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaat |
32463981 |
T |
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| Q |
220 |
gtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccgttc |
278 |
Q |
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| T |
32463982 |
gtccggcgccattctcaataacctcaacttccgactcgaccacaaaagcctctctgttc |
32464040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 23206 - 23461
Alignment:
| Q |
20 |
ttagaaagagcagccactgtctatggcaactccatttccatcatatacaacaacacttcattcacttggtctcaaacccacaaaagatgtcttcaacttg |
119 |
Q |
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||||| |||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||| |
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| T |
23206 |
ttagacagagcagctactgtctatggcaactccatatcaatcatatacaacagcacttcattcacatggtttcaaacccataaacgatgtcttcaacttg |
23305 |
T |
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| Q |
120 |
cttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttcccccaacactccggccatgtatgagcttcatttctccgttccaat |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||||| ||||| || |||||||||||||| |
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| T |
23306 |
cttcatcactttcttccctcggcatcgtaaaaggcgacgtcgtctccgtcctctctcccaacactccggccatgtacgagctacaattctccgttccaat |
23405 |
T |
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| Q |
220 |
gtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccg |
275 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |
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| T |
23406 |
gtccggcgccattctcaacaacctcagcttccgacttgactacaaaaccctctccg |
23461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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