View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12634_high_10 (Length: 431)
Name: NF12634_high_10
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_high_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 52549399 - 52548965
Alignment:
| Q |
1 |
tcaatagatgtcccatagttgtcacagcaaagtaggagttctggtgccctataccaccgtgttacaacatactccgtcatgaactggttcttgctgcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549399 |
tcaatagatgtcccatagttgtcacagcaaagtaggagttctggtgccctataccaccgtgttacaacatactccgtcatgaactggttcttgctgcagt |
52549300 |
T |
|
| Q |
101 |
ttgtgcgtgctaacccaaaatcacatattttcaggtcacaatttgcattaattagaagattcccaggttttaagtcacgatgaaggatgttagctgagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549299 |
ttgtgcgtgctaacccaaaatcacatattttcaggtcacaatttgcattaattagaagattcccaggttttaagtcacgatgaaggatgttagctgagtg |
52549200 |
T |
|
| Q |
201 |
tagatatttcaagccccgaagcagctacgacnnnnnnnnntctattagtaaatccaataaccattcaagcaatgcaaatgattataataatttataactt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52549199 |
tagatatttcaagccccgaagcagctacgacaaaaaaaaatctattagtaaatccaataatcattcaagcaatgcaaatgattataataatttataactt |
52549100 |
T |
|
| Q |
301 |
caagta----agcactgcaaatctgctgccactgcaagtatgacgtaaagggcaggttttctttggatgtgctataggtccagacggggtaaaatgcaat |
396 |
Q |
| |
|
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52549099 |
caaataatttataactgcaaatctgctgccactgcaagtatgacgtaaagggcaggttttctttggatgtgctataggtccagacgggataaaatgcaat |
52549000 |
T |
|
| Q |
397 |
atgcaacaaaaacacaattatttgtaagcatatag |
431 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
52548999 |
atgcaataaaaacacaattatttgtaagcatatag |
52548965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University