View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_high_15 (Length: 337)
Name: NF12634_high_15
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 29282573 - 29282721
Alignment:
| Q |
3 |
attaatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctata |
102 |
Q |
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| T |
29282573 |
attaatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctata |
29282672 |
T |
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| Q |
103 |
gaagaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
151 |
Q |
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| T |
29282673 |
gaagaaccaaaaaacaagcgaaaatagttcctaaacccgaacctgaacc |
29282721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 6470419 - 6470271
Alignment:
| Q |
3 |
attaatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctata |
102 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6470419 |
attaatgtaggagttcaaacagcagtggcagagtttagcacaaggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctata |
6470320 |
T |
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| Q |
103 |
gaagaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
151 |
Q |
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| T |
6470319 |
aaaaaaccaaaaaacaagcaaaaatagttcctaaaccagaacctgaacc |
6470271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 42525072 - 42524926
Alignment:
| Q |
5 |
taatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctataga |
104 |
Q |
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|||||||||||| ||||||| || ||| ||| ||||||||| || || | |||||| || || ||||| | |||||| ||||||||| ||| |||||| |
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| T |
42525072 |
taatgtaggagtacaaacagtagagactgagcatagcacaggaaaggttattgtgacggggaccatggacggcaacaagttagtggattttgtttataga |
42524973 |
T |
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| Q |
105 |
agaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
151 |
Q |
| |
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|||| ||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
42524972 |
cgaactaaaaagcaagccaaaatagttccacaaccagaacctgaacc |
42524926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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