View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_high_17 (Length: 329)
Name: NF12634_high_17
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 52548924 - 52548622
Alignment:
| Q |
11 |
caaaggccttatgcaagatagtcacaaaccaacaaacaagttacacaagtgtgtttcctattgtgttaactccagaataatatatacagattgcatacac |
110 |
Q |
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| T |
52548924 |
caaaggccttatgcaagatagtcacaaaccaacaaacaagttacacaagtgtgtttcctattgtgttaactccagaataatatatacagattgcatacac |
52548825 |
T |
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| Q |
111 |
atataacaatataacacagaatgttcatgatgggaaaaatgatatatttaacatcaagaattttgggttaccctaacaataattcatacctgaaagagga |
210 |
Q |
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| T |
52548824 |
atataacaatataacacagaatgttcatgatgggaaaaatgatatatttgacatcaagaattttgggttaccctaacaataattcatacctgaaagagga |
52548725 |
T |
|
| Q |
211 |
aatattggcagtgatcattagaaagtgcttgggaagacttaataatctgatgcaaatcggtgtccatgagttcataaacaagataaacatccttaaaatt |
310 |
Q |
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| T |
52548724 |
aatattggcagtgatcattagaaagtgcttgggaagacttaataatctgatgcaaatcggtgtccatgagttcataaacaagataaacatccttaaaatt |
52548625 |
T |
|
| Q |
311 |
att |
313 |
Q |
| |
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||| |
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| T |
52548624 |
att |
52548622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 308
Target Start/End: Complemental strand, 35681025 - 35680914
Alignment:
| Q |
197 |
tacctgaaagaggaaatattggcagtgatcattagaaagtgcttgggaagacttaataatctgatgcaaatcggtgtccatgagttcataaacaagataa |
296 |
Q |
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| T |
35681025 |
tacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaaccaagtag |
35680926 |
T |
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| Q |
297 |
acatccttaaaa |
308 |
Q |
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|||||||||||| |
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| T |
35680925 |
acatccttaaaa |
35680914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 35686258 - 35686174
Alignment:
| Q |
224 |
atcattagaaagtgcttgggaagacttaataatctgatgcaaatcggtgtccatgagttcataaacaagataaacatccttaaaa |
308 |
Q |
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|||||||||||||| || | ||||| ||||||||||| | ||| || ||||||||||||||||| | || |||||||||||| |
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| T |
35686258 |
atcattagaaagtgactgagcggactttataatctgatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaa |
35686174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 2607687 - 2607626
Alignment:
| Q |
251 |
aataatctgatgcaaatcggtgtccatgagttcataaacaagataaacatccttaaaattat |
312 |
Q |
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|||||||||||| | ||| |||||||| | ||||||||||| |||||||| |||||||||| |
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| T |
2607687 |
aataatctgatgaagatcagtgtccatcaattcataaacaatgtaaacatcattaaaattat |
2607626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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