View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_high_19 (Length: 319)
Name: NF12634_high_19
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 11195944 - 11195650
Alignment:
| Q |
1 |
aagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataagg |
100 |
Q |
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| T |
11195944 |
aagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataagg |
11195845 |
T |
|
| Q |
101 |
atattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaaca |
200 |
Q |
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| T |
11195844 |
acattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgt---taacgtggttgcggaaca |
11195748 |
T |
|
| Q |
201 |
acaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgcaagaaggta |
298 |
Q |
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| || | ||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| |||||| ||||||| ||||||| |||| |
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| T |
11195747 |
agaacaatttgagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgcaagagggta |
11195650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 11155497 - 11155203
Alignment:
| Q |
1 |
aagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
11155497 |
aagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgctataaatgataagg |
11155398 |
T |
|
| Q |
101 |
atattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaaca |
200 |
Q |
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| T |
11155397 |
atattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgt---taacgtgattgcggaaca |
11155301 |
T |
|
| Q |
201 |
acaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgcaagaaggta |
298 |
Q |
| |
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| || | ||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| |||||| ||||||| ||||||| |||| |
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| T |
11155300 |
agaacaatttgagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgcaagagggta |
11155203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 11208595 - 11208302
Alignment:
| Q |
4 |
tacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggata |
103 |
Q |
| |
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|||||||||||||||| |||| ||| ||||||| | ||| ||||| ||| | |||||||||| |||||||| |||||| || | ||||||||| || |
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| T |
11208595 |
tacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaatatgagggattccataaatgatccagaag |
11208496 |
T |
|
| Q |
104 |
ttagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaacaaca |
203 |
Q |
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| T |
11208495 |
ttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtcttcatgtggcttgacgctaataa---ggtagtagaacaaca |
11208399 |
T |
|
| Q |
204 |
agactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgcaagaaggtact |
300 |
Q |
| |
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||| ||||| | ||||| |||||||||||||||||| || || ||||||| |||||| ||||||||||||| ||||||| || ||||||||||| |
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| T |
11208398 |
agattttgagtgttataggagcattctttcaagtgtgtttgatccaattattttgaagatgataaaggatgaggggcatggtgtggaagaaggtact |
11208302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 11169773 - 11169480
Alignment:
| Q |
4 |
tacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgagg-aatgcgataaatgataaggat |
102 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||| | ||||||||| ||| | |||||| ||| |||||||| |||||| ||| | ||||||||| |||| |
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| T |
11169773 |
tacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattc-ataaatgatccggat |
11169675 |
T |
|
| Q |
103 |
attagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaacaac |
202 |
Q |
| |
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||||| | |||| |||||||||||||||||| ||| |||||||| |||| |||||||||||| | |||||| || |||||| |||||||| ||||||| |
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| T |
11169674 |
attagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaat---gtggttgcagaacaac |
11169578 |
T |
|
| Q |
203 |
aagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgcaagaaggtact |
300 |
Q |
| |
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|||| ||||| |||||| ||||||||||||||||| || || ||||| | | |||| ||||||||||||| ||| || |||||||||||||| |
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| T |
11169577 |
aagattttgaacattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgcaagaaggtact |
11169480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 11275160 - 11274872
Alignment:
| Q |
1 |
aagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataagg |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||| ||| | ||||||||| ||| | |||||||||| |||||||| |||||| || ||||||||| | |
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| T |
11275160 |
aagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataaatgatcccg |
11275061 |
T |
|
| Q |
101 |
atattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaaca |
200 |
Q |
| |
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|||||| | ||||||||| | ||||||||||||||| |||||||| |||| |||||||||||| | |||||| || |||||| |||||||| ||||| |
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| T |
11275060 |
atattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaat---gtggttgcagaaca |
11274964 |
T |
|
| Q |
201 |
acaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgcaag |
292 |
Q |
| |
|
|||||| ||||| | ||||| |||||||||||||||||| || || ||||| | | |||| ||||||||||||| |||||| |||||| |
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| T |
11274963 |
acaagattttgaatgttataggagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacatggtgtgcaag |
11274872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 11242021 - 11242199
Alignment:
| Q |
59 |
agaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaa--agaaaaggaaaagatcaataaagcaattgat |
156 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||||||||| | | ||||||||||| ||| | ||||||||||||| |||||||||||| || |
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| T |
11242021 |
agaagtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-at |
11242119 |
T |
|
| Q |
157 |
ttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattctttcaagtgt |
239 |
Q |
| |
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|
| T |
11242120 |
ttggtcttcacatggcttgatgttaat---gtggttgaagaacaacgagattttgaatgttataggagcattctttcaagtgt |
11242199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 11165546 - 11165377
Alignment:
| Q |
4 |
tacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggata |
103 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||| | ||||||||| ||| | |||||| ||| |||||||| |||||| || | ||||||||| ||| |
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| T |
11165546 |
tacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagaggtacgcatacaatatgagggattccataaatgatccagatg |
11165447 |
T |
|
| Q |
104 |
ttagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggct |
173 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| | |||||| |
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|
| T |
11165446 |
ttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtctttaagtggct |
11165377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 11132215 - 11132051
Alignment:
| Q |
1 |
aagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataagg |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||| ||||| | ||| ||| ||| ||||||| |||||| |||||||||||||| ||||| ||||||| |
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| T |
11132215 |
aagtacaaggatgaagacaagatgtataggaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgccataaacgataagg |
11132116 |
T |
|
| Q |
101 |
atattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtctta |
165 |
Q |
| |
|
| |||| |||||||||||| | |||| |||||| |||| |||| ||||||||| ||||||| |
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|
| T |
11132115 |
agattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtctta |
11132051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 11315745 - 11315976
Alignment:
| Q |
63 |
gtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtc |
162 |
Q |
| |
|
|||||||||||| |||| | |||| || ||||||||||||||||| || | ||||| ||||||||||||| ||||||||||| | ||||||| |||| |
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|
| T |
11315745 |
gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaatgatgcaattggtttgact |
11315844 |
T |
|
| Q |
163 |
ttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaaga |
262 |
Q |
| |
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||| ||||| ||||||| | | || ||| ||||||| || |||| | ||| ||| || ||||||||||| || ||| |||||| ||||||| |
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|
| T |
11315845 |
ttactctggcttcgtgttaatcatgaggatgcaaaacaacatgaaattgaggaacataggagaatgctttcaagtgtgtttgatggaattattgtgaaga |
11315944 |
T |
|
| Q |
263 |
aaataaaggatgaggtgcatggtctgcaagaa |
294 |
Q |
| |
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| ||||||||||||| ||||||| |||||||| |
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| T |
11315945 |
agataaaggatgaggagcatggtgtgcaagaa |
11315976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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