View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_high_28 (Length: 234)
Name: NF12634_high_28
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 47184002 - 47183787
Alignment:
| Q |
1 |
ttttaggtattatggagttttggtcataagataaataaaatttgaacatagattgatctagttagaatttgatctcaagttaccaatatcataagaacgt |
100 |
Q |
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| T |
47184002 |
ttttaggtattatggagttttggtcataagataaataaaatttgaacatagattgatctagttagaatttgatctcaagttaccaatatcataagaacgt |
47183903 |
T |
|
| Q |
101 |
ataaatacaaaatcagaacaaaaacctttagaataaggcaatataaatgtacctgaaataccaatatcatacccaaacataagaccaccgaaagcagcca |
200 |
Q |
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| T |
47183902 |
ataagtacaaaatcagaacaaaaacctttagaataaggctatataaatgtacctgaaataccaatatcataaccaaacataagaccaccgaaagcagcca |
47183803 |
T |
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| Q |
201 |
taatgcaagatactat |
216 |
Q |
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| T |
47183802 |
taatgcaagatactat |
47183787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 47196745 - 47196681
Alignment:
| Q |
146 |
aatgtacctgaaataccaatatcatacccaaacataagaccaccgaaagcagccataatgcaaga |
210 |
Q |
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| T |
47196745 |
aatgtacctgaaataccaacatcataaccaaacataagaccaccagtagcagccatgatgcaaga |
47196681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 751491 - 751544
Alignment:
| Q |
151 |
acctgaaataccaatatcatacccaaacataagaccaccgaaagcagccataat |
204 |
Q |
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| T |
751491 |
acctgaaacaccaacatcataaccgaacataagaccaccggtagcagccataat |
751544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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