View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_high_6 (Length: 504)
Name: NF12634_high_6
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_high_6 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 115412 - 114929
Alignment:
| Q |
19 |
acactatactagaaaatatcatagtcagtggggactagactagcaaaattagggtaaactagtataacttctttacgccgtcttctctatctagtaactc |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
115412 |
acactatactagaaaatctcatagtcagtggggactagactagcaaaattagggtaaactagtataacttctttacgccgtcttgtctatctagtaactc |
115313 |
T |
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| Q |
119 |
cttcatttaatagttgagaagcaagaacaataatccaatttcttattgtatcaaatattttgatacatacttca--------ttcatcagataagaacat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
115312 |
cttcatttaatagttgagaagcaagaacaataatccaatttcttattgtatcaaatattttgatacatacttcagaattcagatcatcagataagaacat |
115213 |
T |
|
| Q |
211 |
cttctcaaggttgagaaagagcaaaaatttcaaagattcacaattcaaaccccttttgtcagggttttgtaccgtttatagtttc-ttttttcatattta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||| |
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| T |
115212 |
cttctcaaggttgagaaagagcaaaaatttcaaagattcacaattcaaaccccttttgtcagggtttagtaccgtttattgtttctttttttgatattta |
115113 |
T |
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| Q |
310 |
ggtatagttctatattttgccataaaagaaaaattagctcacnnnnnnntttcaaatcacccttgcatcgaaccaccatatgatctagtannnnnnnnnn |
409 |
Q |
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|||||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
115112 |
ggtatagtgctattttttgccattaaagaaaaattagctcacaaaaaaatttcaaatcacccttgcatcgaaccaccatatgatctagta-ttgtttttt |
115014 |
T |
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| Q |
410 |
nnnnnnnnnaataaatgatctagtaatgttttgtagtttagatattataaaaacataatagaacgtgatggcatccaatcctttg |
494 |
Q |
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| T |
115013 |
tttttttttaataaatgatctagtaatgttttgtagtttagatattataaaaacataatagaacgtgatggcatccaatcctttg |
114929 |
T |
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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 23948005 - 23947899
Alignment:
| Q |
137 |
aagcaagaacaataatccaatttcttattgtatcaaat--attttgatacatacttcat-tcatcagataagaacatcttctcaaggttgagaaagagca |
233 |
Q |
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||||||| |||| ||||||||| || ||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||| |
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| T |
23948005 |
aagcaagttcaatcatccaatttgttcttgtatcaaattcattttgatacatacttcatgtcatcagttctgaacatcttctcaaggttgagaagcagcc |
23947906 |
T |
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| Q |
234 |
aaaattt |
240 |
Q |
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||||||| |
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| T |
23947905 |
aaaattt |
23947899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 18603255 - 18603127
Alignment:
| Q |
65 |
aattagggtaaactagtataacttcttt-acgccgtcttctctatctagtaactccttcatttaatagttgagaagcaagaacaataatccaatttctta |
163 |
Q |
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|||||| ||||| ||| ||||||||||| | | | |||||| |||| |||||| || |||| |||||| ||||||||| | ||| ||| ||| | ||| |
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| T |
18603255 |
aattagcgtaaaataggataacttcttttatgtcatcttctttatcccttaactcatttatttgatagttcagaagcaagcaaaatcatctaatctttta |
18603156 |
T |
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| Q |
164 |
ttgtatcaaat--attttgatacatactt |
190 |
Q |
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| T |
18603155 |
ttgtatcaaattcattttgatacatactt |
18603127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 33699684 - 33699582
Alignment:
| Q |
123 |
atttaatagttgagaagcaagaacaataatccaatttcttattgtatcaaa--tattttgatacatacttca-ttcatcagataagaacatcttctcaag |
219 |
Q |
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|||| |||||| |||||||| ||| ||| ||||| |||| |||||||||| |||||||||||| |||||| |||||| || ||||||||||||||| |
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| T |
33699684 |
atttgatagttcagaagcaaacacattaaaccaatctcttcttgtatcaaatttattttgatacaaacttcagatcatcatatctgaacatcttctcaag |
33699585 |
T |
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| Q |
220 |
gtt |
222 |
Q |
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||| |
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| T |
33699584 |
gtt |
33699582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 26407651 - 26407712
Alignment:
| Q |
30 |
gaaaatatcatagtcagtggggactagactagcaaaattagggtaaactagtataacttctt |
91 |
Q |
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|||||||| |||| |||||||||| ||||||| ||||||||| ||| ||||||||||||| |
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| T |
26407651 |
gaaaatattgtagttagtggggactggactagcccaattagggtgaacgagtataacttctt |
26407712 |
T |
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