View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_1 (Length: 948)
Name: NF12634_low_1
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 871; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 871; E-Value: 0
Query Start/End: Original strand, 22 - 935
Target Start/End: Complemental strand, 7331436 - 7330522
Alignment:
| Q |
22 |
ccttgcttttctatgtttttattttgagtaaatagtccctttggtccttgaatgtgttaggcattgtcgctatagtccttcaattcatcaaaattacaaa |
121 |
Q |
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| T |
7331436 |
ccttgcttttctatgtttttattttgagtaaatagtccctttggtccttgaatgtgttaggcattgtcgctatagtccttcaattcatcaaaattacaaa |
7331337 |
T |
|
| Q |
122 |
catactcttgattacgtctatagttagttaatttaatcctcaaatgtgttttacattagttagttagtccttaaatgttaatttaattagtcagattgat |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331336 |
catattcttgattacgtctatagttagttaatttaatcctcaaatgtgttttacattagttagttagtccttaaatgttaatttaattagtcagattgat |
7331237 |
T |
|
| Q |
222 |
ccatcaaattactaacaaaatataaactcaaggatgtatttgtcatttcgatacatttagggactatagtgataccacttcacacat-tagtgaccaaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
7331236 |
ccatcaaattactaacaaaatataaactcaaggatgtatttgtcatttcgatacatttagggactatagtgacaccacttcacacatctagtgaccaaaa |
7331137 |
T |
|
| Q |
321 |
tgactttttactcttttatttgttaatgatattcttgactttttactcaaactatatcatataatcaaatcatagcctaaattcaattgattctggactt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331136 |
tgactttttactcttttatttgttaatgatattcttgacttttttctcaaactatatcatataatcaaatcatagcctaaattcaattgattctggactt |
7331037 |
T |
|
| Q |
421 |
tggatgcattggtttcttctctatgtagaatgagtacactaacttactaaaaattaattaacagtagtatctaatttgaagcatgccaggttgaagaaaa |
520 |
Q |
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| T |
7331036 |
tggatgcattggtttcttctctatgtagaatgagtacactaacttactaaaaattaattaacagtagtatctaatttgaagcatgccaggttgaagaaaa |
7330937 |
T |
|
| Q |
521 |
ggtgacaccacattcttcagttgaaaaaaggtgtacacaatgtgatcattctacatccaacaacgattaccgggaatgtaacttgtgttgcaagcatgaa |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7330936 |
ggtgacaccacattcttcagttgaaaaaaggtgtacacaatgtgatcatcctacatccaacaacgattaccgggaatgtaacttgtgttgcaagcatgaa |
7330837 |
T |
|
| Q |
621 |
caaacgatgaaaaatgacttacttgcgcaaaaagtacaagataaaaagaaaaatagagtgggaagtaatgcaaggaagcatatatttggcgtttccactc |
720 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7330836 |
caaacgatgaaaaatgacttacttgcgcaaaaagtaaaagataaaaagaaaaatagagtgggaagtaatgcaaggaagcatatatttggcgtttccactc |
7330737 |
T |
|
| Q |
721 |
gtttatgcaagcattttgttagtcgtgtggaaacaaccaacgtgaagaagaaaatattaaaatttcttcatgatcctatctttcctatggtttatcattt |
820 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7330736 |
gtttatgcaagcattttgttggtcgtgtggaaacaaccaacgtgaagaagaaaatattaaaatttcttcatgatcctgtctttcctatggtttatcattt |
7330637 |
T |
|
| Q |
821 |
ccataaacaacaattgcgaagagaaaaaattacactaaataggtcgaaatcgtgtccttctccttactcgtcatccaaaccaaaagtgaaaggaagatta |
920 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7330636 |
ccataaacaacaattgcgaagagaaaaaattacactaaataggtctaaatcgtgtccttctccttactcgtcatcaaaaccaaaagtgaaaggaagatta |
7330537 |
T |
|
| Q |
921 |
tatcgtgacagtgaa |
935 |
Q |
| |
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||||||||||||||| |
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|
| T |
7330536 |
tatcgtgacagtgaa |
7330522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 38350920 - 38350976
Alignment:
| Q |
221 |
tccatcaaattactaacaaaatataaactcaaggatgtatttgtcatttcgatacat |
277 |
Q |
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|||||||||||| ||||| |||||| |||||| ||| ||||||| |||||||||||| |
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| T |
38350920 |
tccatcaaattattaacagaatatacactcaatgatttatttgtaatttcgatacat |
38350976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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