View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_10 (Length: 441)
Name: NF12634_low_10
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 13713486 - 13713871
Alignment:
| Q |
11 |
gagagaagaaatactataattacaacagtaattcatgtgctgctggttatcagtgtggacattatactcaagttgtctggcgcgattcggttcgggttgg |
110 |
Q |
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| T |
13713486 |
gagagaagaagtactataattacaacagtaattcatgtgctgttggttatcagtgtggacattatactcaagttgtctggcgcgattcggttcgggttgg |
13713585 |
T |
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| Q |
111 |
atgtgctaaggtaaagtgtaatgatggccgtagcaccattattagttgtaactatgatccacctggtaattatattggtcagaggccttttaatattagt |
210 |
Q |
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| T |
13713586 |
atgtgctaaggttaagtgtaatgatggtcgtagcaccattattagttgtaactatgatccacctggtaattatattggtcagaggccttttgatattagt |
13713685 |
T |
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| Q |
211 |
ccttttgaagtgccattgagcttcaaccatggtagttttgatgacaagtaaggtaagatagataagaagtgtggtgtttaatgtgaattaaataaatgga |
310 |
Q |
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| T |
13713686 |
ccttttgaagtgccattgagcttcaaccatggtagttttgatgacaagtaaggtaagatagataagaagtgtggtgtttaatgtgaattaaataaatgga |
13713785 |
T |
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| Q |
311 |
tgtggccattctgtatatatgttatagtatacagagagattcatattgtatgtgtttttagttttgagattaatggattctcaagc |
396 |
Q |
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| T |
13713786 |
tgtggccattctgtatatatgttatagtatacagagagattcatattgtatgtgtttttagttttgagattaatggattctcaagc |
13713871 |
T |
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