View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12634_low_2 (Length: 759)
Name: NF12634_low_2
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 18 - 746
Target Start/End: Original strand, 28751572 - 28752300
Alignment:
| Q |
18 |
gttatctcttcttggatttcacacaacgacgagaatctttgttgaagttcttccttcagcaacgcgctgttttccaaccataatgtgagttcattttgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28751572 |
gttatctcttcttggatttcacacaacgacgagaatctttgttgaagttcttccttcagcaacgcgctgttttccaaccataatgtgagttcattttgaa |
28751671 |
T |
|
| Q |
118 |
tctctgcaaggtgtttataaagtggtcttgcatctgatttcaatgaatatttagtgctagtacttccttctgttgctttccattttgtttcgagattcga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28751672 |
tctctgcaaggtgtttataaagtggtcttgcatctgatttcaatgaatatttagtgctagtacttccttctgttgctttccattttgtttcgagattcga |
28751771 |
T |
|
| Q |
218 |
tacctcaatcagtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctagattctcctcgagaagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28751772 |
tacctcaatcagtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctagattctcctcgagaagt |
28751871 |
T |
|
| Q |
318 |
tcgtcgatacccatccgaaacttctcttcaacagcagaacttgattttggttcttccaacttaaacatttcctcaataacatgattttctggtggctgca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28751872 |
tcgtcgatacccatccgaaacttctcttcaacagcagaacttgattctggttcttctaacttaaacattttctcaataacatgattttctggtggctgca |
28751971 |
T |
|
| Q |
418 |
aaggaggtaactctccgatttcttcatttccctcaaggcttttgtgcaaaagacttagtttctgacgtaggagtcgaatctcttcgtctttcacggcatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28751972 |
aaggaggtaactctccgatttcttcatttccctcaaggcttttgtgcaaaagacttagtttctgacgtaggagtcgaatctcttcgtctttcacggcatt |
28752071 |
T |
|
| Q |
518 |
agaagtcttcaattctttcacctgcaatgatgactcaaagagtgcatcttgatgattcttctctaattcgttgagtttgttcttcacttcttcataattc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28752072 |
agaagtcttcaattctttcacctgcaatgatgactcaaagagtgcatcttgatgattcttctctaattcgctgagtttgttcttcacttcttcataattc |
28752171 |
T |
|
| Q |
618 |
ataagagtgttcctatactcgaaaagcaaagcattatcttctggtgttgttgctttctcctcggaatcttctttaaaagtagtagttgtctcggatgaaa |
717 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28752172 |
ataagagtgttcctatactctaaaagcaaagcattatcttctggtgttgttgctttctcctcggaatcttctttaaaagtagtagttgtctcggatgaaa |
28752271 |
T |
|
| Q |
718 |
tttccttataatccttttcatgatgtcca |
746 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
28752272 |
tttccttataatccttttcatgatttcca |
28752300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 6623166 - 6623294
Alignment:
| Q |
228 |
agtaaatcttttgtagttgtttcgtatttctgtatctcggtgaaagaagtgctgaatttcatccagaattctagattctcctcgagaagttcgtcgatac |
327 |
Q |
| |
|
||||||||||||| ||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| | || | |
|
|
| T |
6623166 |
agtaaatcttttgcagtggttacatatttttgtatctcagtgaaagaagtactgaatttcatccaaaattctagactctcctcgagaagttcatgaattc |
6623265 |
T |
|
| Q |
328 |
ccatccgaaacttctcttcaacagcagaa |
356 |
Q |
| |
|
|| ||| || ||||||||| |||||||| |
|
|
| T |
6623266 |
ccctcctgaatttctcttcagcagcagaa |
6623294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University