View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12634_low_22 (Length: 258)
Name: NF12634_low_22
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 28872611 - 28872385
Alignment:
| Q |
13 |
ggagcacagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaaga |
112 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28872611 |
ggagctcagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaaga |
28872512 |
T |
|
| Q |
113 |
aatcaggtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtcaagctttgattact |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28872511 |
aatcaggtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtcaagctttgattact |
28872412 |
T |
|
| Q |
213 |
tgaagatgaagttgggaatggctgaag |
239 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
28872411 |
tgaaaatgaagttgggaatggctgaag |
28872385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 9507312 - 9507535
Alignment:
| Q |
19 |
cagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaagaaatcag |
118 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||| || |||||||||||||| ||||||||||||| |||||||| |||||||||| | ||| |
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| T |
9507312 |
cagaattgatagcaaatctgctatagacttggcaaaacatccagtagcacatggtaggagcaagcatattgaaaccaaattccattttctaagagaccag |
9507411 |
T |
|
| Q |
119 |
gtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtcaag---ctttgattacttga |
215 |
Q |
| |
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|| |||||| |||||||||| ||||| || ||||||||||||||||||||| ||||| |||||||||| |||| ||| ||| |||||||||||||| |
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| T |
9507412 |
gtgaacaatagaaagttggaagtaaagcactgcaaaacagatgagcagataccagacctgctcacaaagccattaaagctaagcaactttgattacttga |
9507511 |
T |
|
| Q |
216 |
agatgaagttgggaatggctgaag |
239 |
Q |
| |
|
||| |||||| ||||||| ||||| |
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|
| T |
9507512 |
agaagaagttaggaatggttgaag |
9507535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 9503517 - 9503556
Alignment:
| Q |
200 |
agctttgattacttgaagatgaagttgggaatggctgaag |
239 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
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| T |
9503517 |
agctttgattacttgaagaagaagttaggaatggctgaag |
9503556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 27236943 - 27237172
Alignment:
| Q |
13 |
ggagcacagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaaga |
112 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||||||| |||| || |||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
27236943 |
ggagctcagaattgatagcaaatctgctatagacttggcaaaacatccagtagcacatggtaggagcaagcatattgaaaccaaattcccttttctaaga |
27237042 |
T |
|
| Q |
113 |
aatcaggtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtcaag---ctttgatt |
209 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| ||||| |||| ||||| |||||||| ||| |||||||| |
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|
| T |
27237043 |
gaccaggtgaacaatggaaagttggaagtaaagcactgcaaaacagatgagcagatagcagacctgcttacaaagccattgaagctaagcaactttgatt |
27237142 |
T |
|
| Q |
210 |
acttgaagatgaagttgggaatggctgaag |
239 |
Q |
| |
|
||||||||| |||||| ||||||||||||| |
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|
| T |
27237143 |
acttgaagaagaagttaggaatggctgaag |
27237172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 32813286 - 32813448
Alignment:
| Q |
80 |
aagcatattgaaatcaaattcccttttctaagaaatcaggtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgc |
179 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| | ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||| |
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|
| T |
32813286 |
aagcttattgaaaccaaattccattttctaagagaccaggtgaacaatggaaagttggaagtaaagcactgcaaaacagatgagcagatagcagacttgc |
32813385 |
T |
|
| Q |
180 |
tcacaaaatcattgaagtca---agctttgattacttgaagatgaagttgggaatggctgaag |
239 |
Q |
| |
|
|| |||| |||||||| | ||||||||||||||||||| |||||| ||||||| ||||| |
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|
| T |
32813386 |
tcgcaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggttgaag |
32813448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 5989078 - 5989307
Alignment:
| Q |
13 |
ggagcacagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaaga |
112 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||| ||| |||| || |||||||||||||| ||||||||||||| |||||||| |||| ||||| |
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|
| T |
5989078 |
ggagctcagaattgatagcaaatctgctatagacttggaaaaacatccagtagcacatggtaggagcaagcatattgaaaccaaattccattttttaaga |
5989177 |
T |
|
| Q |
113 |
aatcaggtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtca---agctttgatt |
209 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||| ||||| |||||||||| |||||||| | |||||||||| |
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|
| T |
5989178 |
gaccaggtgaacaatggaaagttggaagtaaagcactgcaaaacagatgagcagatagcagacctgctcacaaagccattgaagctaagcagctttgatt |
5989277 |
T |
|
| Q |
210 |
acttgaagatgaagttgggaatggctgaag |
239 |
Q |
| |
|
||||||||| |||||| ||||||||||||| |
|
|
| T |
5989278 |
acttgaagaagaagttaggaatggctgaag |
5989307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 45486249 - 45486027
Alignment:
| Q |
19 |
cagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaagaaatcag |
118 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||| |||| | ||||||| ||||| ||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
45486249 |
cagaattgataacaaatctgctatagacttggcaaaacatcca-tagcacatgagaggagcaagcatattgaaaccaaattccattttctaagaaatcat |
45486151 |
T |
|
| Q |
119 |
gtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtca---agctttgattacttga |
215 |
Q |
| |
|
|| ||||||||||||||||| ||||| || ||||||||||||||||||||| ||||| |||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
45486150 |
gtgaacaatggaaagttggaagtaaagcactgcaaaacagatgagcagatagcagacctgctcacaaagccattgaagctaagtagctttgattacttga |
45486051 |
T |
|
| Q |
216 |
agatgaagttgggaatggctgaag |
239 |
Q |
| |
|
||| |||||| ||||||| ||||| |
|
|
| T |
45486050 |
agaagaagttaggaatggttgaag |
45486027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 56562896 - 56563119
Alignment:
| Q |
19 |
cagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaagaaatcag |
118 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||| |||| || |||||||||||||| ||||||||||||| || ||||| |||||||||| | ||| |
|
|
| T |
56562896 |
cagaattgatagcaaatctactataggcttggcaaaacatccagtagcacatggtaggagcaagcatattgaaaccagattccattttctaagagaccag |
56562995 |
T |
|
| Q |
119 |
gtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtca---agctttgattacttga |
215 |
Q |
| |
|
|||||||||||||| || ||||| || |||||||||||||| |||||| ||||| |||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
56562996 |
tggaacaatggaaagtttgaagtaaagcactgcaaaacagatgaacagatagcagacatgctcacaaagccattgaagctaagcagctttgattacttga |
56563095 |
T |
|
| Q |
216 |
agatgaagttgggaatggctgaag |
239 |
Q |
| |
|
||| |||||| ||||||||||||| |
|
|
| T |
56563096 |
agaagaagttaggaatggctgaag |
56563119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 53010814 - 53011037
Alignment:
| Q |
19 |
cagaattgatagcaagtcagctatagacttggcaaagtatccggtggcacatggtaggagtaagcatattgaaatcaaattcccttttctaagaaatcag |
118 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||| || | | |||||||||||||| ||||||||||||| |||||||| |||||||||| || |
|
|
| T |
53010814 |
cagaattgacagcaaatctgctatagacttggcaaaacattcaatagcacatggtaggagcaagcatattgaaaccaaattccattttctaagagtccaa |
53010913 |
T |
|
| Q |
119 |
gtaaacaatggaaagttggaggtaaaacattgcaaaacagatgagcagataacagacttgctcacaaaatcattgaagtca---agctttgattacttga |
215 |
Q |
| |
|
| ||||||||||| | || ||||| || ||||||||||||||||||||| ||||| | |||||||| |||||||| | |||||||||||||||| |
|
|
| T |
53010914 |
ctggacaatggaaaggttgaagtaaagcactgcaaaacagatgagcagatagcagacctactcacaaagccattgaagctaagcagctttgattacttga |
53011013 |
T |
|
| Q |
216 |
agatgaagttgggaatggctgaag |
239 |
Q |
| |
|
||| |||||| ||||||||||||| |
|
|
| T |
53011014 |
agaagaagttaggaatggctgaag |
53011037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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