View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_25 (Length: 241)
Name: NF12634_low_25
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11195945 - 11196183
Alignment:
| Q |
1 |
ctcagcttctttgatcatcctctcaatttccttctttgacaatcttcccttatcacttattattttaaccttattattacccccaaggaatttctccctg |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
11195945 |
ctcagcttctttgatcatcctctcaatttcctcctttgacaatcttcccttatcacttattattttaaccttattattaactccaaggaatttctccctg |
11196044 |
T |
|
| Q |
101 |
ctacagatgtgtaagatgccatcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11196045 |
ctacagatgtgtaagatgccatcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttccta |
11196144 |
T |
|
| Q |
201 |
gcaagttgttgtccctagttattttcctctcaccttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
11196145 |
gcaagttgttgtccctagttattttcctctcaccttcat |
11196183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11155498 - 11155736
Alignment:
| Q |
1 |
ctcagcttctttgatcatcctctcaatttccttctttgacaatcttcccttatcacttattattttaaccttattattacccccaaggaatttctccctg |
100 |
Q |
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|||||||||||||||| |||||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||| | |||||| | || ||| || |
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| T |
11155498 |
ctcagcttctttgatcttcctctcaatatcctcctttgacaaccttcccttgtcacttattattttaaccttcttattaactccaagggacttttccgtg |
11155597 |
T |
|
| Q |
101 |
ctacagatgtgtaagatgccatcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttccta |
200 |
Q |
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| T |
11155598 |
ctacaaacgtctaagatgccatcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaa |
11155697 |
T |
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| Q |
201 |
gcaagttgttgtccctagttattttcctctcaccttcat |
239 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
11155698 |
gcaagttgttttccctagttattttcctctcaccttcat |
11155736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11208599 - 11208666
Alignment:
| Q |
1 |
ctcagcttctttgatcatcctctcaatttccttctttgacaatcttcccttatcacttattattttaa |
68 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||| ||| |||||||| |
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| T |
11208599 |
ctcagcttcactgatcatcctctcaatttcctcctttgacagtcttcccttgtcatttactattttaa |
11208666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 11132328 - 11132449
Alignment:
| Q |
113 |
aagatgccatcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgt |
212 |
Q |
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|||||||| || | ||| |||||||| | || ||||| ||||| | |||||||| ||| || ||||||||||| |||||| |||||||||||||||| |
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| T |
11132328 |
aagatgccgtcattatcaatttggaaactgaccatgatttgaggtatacctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttcc |
11132427 |
T |
|
| Q |
213 |
ccctagttattttcctctcacc |
234 |
Q |
| |
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|| |||||||||| || ||||| |
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| T |
11132428 |
ccatagttatttttctttcacc |
11132449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11275161 - 11275228
Alignment:
| Q |
1 |
ctcagcttctttgatcatcctctcaatttccttctttgacaatcttcccttatcacttattattttaa |
68 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| ||||||||| | | ||| |||||||| |
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| T |
11275161 |
ctcagcttcattgatcatcctctcaatttcctcttttgacagtcttcccttgttatttactattttaa |
11275228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 11169949 - 11170015
Alignment:
| Q |
173 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcat |
239 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||| ||||||||| ||||||||| |||| |
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| T |
11169949 |
ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcat |
11170015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 11275333 - 11275399
Alignment:
| Q |
173 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcat |
239 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||| ||||| ||||||||||||| |||| |
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| T |
11275333 |
ggaggaatttcaaacctaaaagttcctagcaagttgttgtccttagttgttttcctctcaccctcat |
11275399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 11208771 - 11208837
Alignment:
| Q |
173 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcat |
239 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||| ||||| ||| ||||||||| |||| |
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| T |
11208771 |
ggaggaatttcaaactcaaaagatcctagcaagttgttgtccttagttgtttgcctctcaccctcat |
11208837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 11160566 - 11160598
Alignment:
| Q |
207 |
tgttgtccctagttattttcctctcaccttcat |
239 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
11160566 |
tgttttccctagttattttcctctcaccttcat |
11160598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 11199147 - 11199179
Alignment:
| Q |
207 |
tgttgtccctagttattttcctctcaccttcat |
239 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
11199147 |
tgttttccctagttattttcctctcaccttcat |
11199179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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