View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12634_low_26 (Length: 240)
Name: NF12634_low_26
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 21711993 - 21711851
Alignment:
| Q |
96 |
taatatagtgaaagtcatcatgaatttgatattataaacatccatataacttgtttcatataactatt-gtcaggtctgctattcccatattgaaactgg |
194 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
21711993 |
taatatagtgaa-gtcatcatgaatttgatatcataaacatccatataacttgtttcatataactatttggcaggtctgctattcacatattgaaactgg |
21711895 |
T |
|
| Q |
195 |
ttctacaatggaagaaattggagttttacttcctatcattcaat |
238 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21711894 |
ttctgcaatggaagaaattggagttttacttcctatcattcaat |
21711851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 21712132 - 21712076
Alignment:
| Q |
18 |
atttgagaatctgaagctacttcaaacgaaggaaagaccattgtaaatttcaaataa |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
21712132 |
atttgagaatctgaagctacttcaaacgaaggaagcaacattgtaaatttcaaataa |
21712076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 21708125 - 21708184
Alignment:
| Q |
166 |
caggtctgctattcccatattgaaactggttctacaatggaagaaattggagttttactt |
225 |
Q |
| |
|
||||||||||||| | || ||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21708125 |
caggtctgctattgcaatcttgcaactggttcaacaatggaagaaattggagttttactt |
21708184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University