View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12634_low_27 (Length: 239)

Name: NF12634_low_27
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12634_low_27
NF12634_low_27
[»] chr1 (14 HSPs)
chr1 (1-156)||(19277890-19278044)
chr1 (4-86)||(13243334-13243418)
chr1 (102-158)||(36490886-36490942)
chr1 (98-151)||(25465272-25465325)
chr1 (98-150)||(1502731-1502783)
chr1 (98-158)||(6180293-6180353)
chr1 (98-147)||(23576425-23576474)
chr1 (98-151)||(32201738-32201791)
chr1 (98-151)||(35512839-35512892)
chr1 (98-150)||(1366162-1366214)
chr1 (98-150)||(13321991-13322043)
chr1 (98-158)||(22167442-22167502)
chr1 (98-142)||(34802090-34802134)
chr1 (98-150)||(39310797-39310849)
[»] chr4 (11 HSPs)
chr4 (98-158)||(24684944-24685004)
chr4 (81-151)||(40049672-40049743)
chr4 (98-158)||(18882278-18882338)
chr4 (98-158)||(19450911-19450971)
chr4 (98-158)||(34941385-34941445)
chr4 (101-151)||(50352416-50352466)
chr4 (98-158)||(19468301-19468361)
chr4 (98-158)||(52391405-52391465)
chr4 (98-151)||(39876944-39876997)
chr4 (98-150)||(9759153-9759205)
chr4 (98-158)||(17409931-17409991)
[»] chr3 (12 HSPs)
chr3 (82-158)||(50204510-50204587)
chr3 (81-151)||(10307880-10307951)
chr3 (101-156)||(23803060-23803115)
chr3 (81-158)||(31318748-31318826)
chr3 (98-151)||(2571382-2571435)
chr3 (98-158)||(8165753-8165813)
chr3 (98-158)||(51401547-51401607)
chr3 (98-158)||(51618154-51618214)
chr3 (98-150)||(38277448-38277500)
chr3 (98-158)||(42180159-42180219)
chr3 (98-158)||(46492354-46492414)
chr3 (98-158)||(54527717-54527777)
[»] chr2 (12 HSPs)
chr2 (98-151)||(9747431-9747484)
chr2 (98-151)||(7757797-7757850)
chr2 (80-156)||(29157821-29157898)
chr2 (98-151)||(38248431-38248484)
chr2 (98-150)||(24729588-24729640)
chr2 (99-151)||(34213961-34214013)
chr2 (102-151)||(5583573-5583622)
chr2 (98-147)||(26003357-26003406)
chr2 (98-158)||(7720222-7720282)
chr2 (98-150)||(8065238-8065290)
chr2 (98-142)||(8770897-8770941)
chr2 (98-142)||(15411633-15411677)
[»] chr8 (14 HSPs)
chr8 (98-158)||(28014869-28014929)
chr8 (82-151)||(14961657-14961727)
chr8 (98-151)||(2161501-2161554)
chr8 (98-158)||(9580120-9580180)
chr8 (98-158)||(27874692-27874752)
chr8 (98-147)||(3306066-3306115)
chr8 (98-151)||(5573400-5573453)
chr8 (98-151)||(16445747-16445800)
chr8 (118-147)||(21369241-21369270)
chr8 (98-151)||(26364001-26364054)
chr8 (82-137)||(6818145-6818201)
chr8 (82-141)||(10129227-10129287)
chr8 (98-158)||(38212955-38213015)
chr8 (102-158)||(45006077-45006132)
[»] chr7 (11 HSPs)
chr7 (98-158)||(4969880-4969940)
chr7 (98-147)||(8091323-8091372)
chr7 (98-151)||(25709410-25709463)
chr7 (98-151)||(34270375-34270428)
chr7 (98-151)||(44473523-44473576)
chr7 (98-151)||(46290124-46290177)
chr7 (98-158)||(26037200-26037260)
chr7 (98-158)||(29398145-29398205)
chr7 (98-150)||(33072096-33072148)
chr7 (98-158)||(45501566-45501626)
chr7 (98-151)||(33343102-33343155)
[»] chr6 (5 HSPs)
chr6 (98-158)||(34692461-34692521)
chr6 (98-151)||(14228137-14228190)
chr6 (98-151)||(17552598-17552651)
chr6 (98-151)||(28943780-28943833)
chr6 (98-156)||(30591174-30591232)
[»] chr5 (7 HSPs)
chr5 (98-158)||(3398327-3398387)
chr5 (81-151)||(30839895-30839966)
chr5 (98-151)||(36597693-36597746)
chr5 (98-158)||(23995427-23995487)
chr5 (106-150)||(30893469-30893513)
chr5 (98-151)||(41350316-41350369)
chr5 (98-142)||(30893752-30893796)
[»] scaffold0192 (1 HSPs)
scaffold0192 (98-147)||(13574-13623)
[»] scaffold0229 (1 HSPs)
scaffold0229 (98-150)||(24538-24590)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 19278044 - 19277890
Alignment:
Q  1 aacaatgtaatatattgaaacatggtagttgtacttagacaaaactgcttcctacgttccttaatataggagtattttacaaaaatggtttttct-taat 99  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||    
T  19278044 aacaatgtaatataatgaaacatggtagttgtacttagacaaaagtgcttcctacgttccttaata--ggagtattttacaaaaatgttttttctataat 19277947  T
Q  100 gtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19277946 gtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 19277890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 13243418 - 13243334
Alignment:
Q  4 aatgtaatatattgaaacatggtagttgtacttagacaaaactgcttcctacgttcc--ttaatataggagtattttacaaaaat 86  Q
    |||||| |||| | ||||||||||||||||||||||||||  |||||||| ||| ||  ||||||||||| | ||||||||||||    
T  13243418 aatgtagtatactcaaacatggtagttgtacttagacaaaggtgcttcctccgtcccctttaatataggatttttttacaaaaat 13243334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 36490942 - 36490886
Alignment:
Q  102 gcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||  ||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  36490942 gcaaatttgcacatgttaagaagtttaaaatagtaactttgcattggaacttgtaca 36490886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 25465325 - 25465272
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| ||||||| |||||||||| |||||||||||||    
T  25465325 atgtgcaaatttgcacatgttaagaagttcaaaatagtaaatttgcattggaac 25465272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 1502731 - 1502783
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  1502731 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaa 1502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 6180353 - 6180293
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  |||||||| ||||||    
T  6180353 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattggaacttgtaca 6180293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 23576425 - 23576474
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 147  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||    
T  23576425 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattg 23576474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 32201791 - 32201738
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  |||| || |||||||||||||| ||| |||||||||||||    
T  32201791 atgtgcaaatttgcacatattaagaagtttaaaataataaatttgcattggaac 32201738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 35512892 - 35512839
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  ||||||||    
T  35512892 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattggaac 35512839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 1366214 - 1366162
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  ||||||  |||| |||||||||||||||||| |||||||    
T  1366214 atgtgcaaatttacacatgtaaagaaatttaaaatagtaattttgtattggaa 1366162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 13322043 - 13321991
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  | ||||| ||||||||||||||| ||||||| |||||||    
T  13322043 atgtgcaaatttgcatatgttaagaagtttaaaatagaaattttgtattggaa 13321991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 22167502 - 22167442
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||| | ||||||||||||||| || |||| |||||||| ||||||    
T  22167502 atgtgcaaatttgcacatgataagaagtttaaaatagaaactttgtattggaacttgtaca 22167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 34802134 - 34802090
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 142  Q
    ||||||||||||  ||||||| ||||||||||||| |||||||||    
T  34802134 atgtgcaaatttgcacatgttaagaagtttaaaatggtaattttg 34802090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 39310797 - 39310849
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  ||||||| | ||||||||||||| ||||||| |||||||    
T  39310797 atgtgcaaatttgcacatgttaaaaagtttaaaatagaaattttgtattggaa 39310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 24685004 - 24684944
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  24685004 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgcattggaacttgtaca 24684944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 40049743 - 40049672
Alignment:
Q  81 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||| ||||||||| | ||||||||||||  ||||||| |||| |||||||||||||||||||||||||||    
T  40049743 aaaaagggtttttctattatgtgcaaatttgcacatgttaagaaatttaaaatagtaattttgcattggaac 40049672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 18882278 - 18882338
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  18882278 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 18882338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 19450911 - 19450971
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  19450911 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 19450971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 34941445 - 34941385
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    |||||| |||||  ||||| | |||||||||||||||||||||||||||||||| ||||||    
T  34941445 atgtgcgaatttgcacatgataagaagtttaaaatagtaattttgcattggaacttgtaca 34941385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 50352466 - 50352416
Alignment:
Q  101 tgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    |||||||||  ||||||| |||| |||||||||||||||||||||||||||    
T  50352466 tgcaaatttgcacatgttaagaaatttaaaatagtaattttgcattggaac 50352416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 19468361 - 19468301
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||| ||| ||||||    
T  19468361 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattgaaacttgtaca 19468301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 52391465 - 52391405
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||| ||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  52391465 atgtgtaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 52391405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 39876997 - 39876944
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||| ||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  39876997 atgtgtaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 39876944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 9759153 - 9759205
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    |||| |||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  9759153 atgtacaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaa 9759205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 17409991 - 17409931
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||| | ||||||||||||||| || |||| |||||||| ||||||    
T  17409991 atgtgcaaatttgcacatgataagaagtttaaaatagaaactttgtattggaacttgtaca 17409931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 50204587 - 50204510
Alignment:
Q  82 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    |||| ||||||||| | ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  50204587 aaaagggtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacctgtaca 50204510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 10307951 - 10307880
Alignment:
Q  81 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||| ||||||||| | ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  10307951 aaaaagggtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaaatttgcattggaac 10307880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 23803060 - 23803115
Alignment:
Q  101 tgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 156  Q
    |||||||||  ||||||| ||||||||||||||| |||||||||||||||| ||||    
T  23803060 tgcaaatttgcacatgttaagaagtttaaaatagaaattttgcattggaacttgta 23803115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 31318826 - 31318748
Alignment:
Q  81 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||| ||||||| | ||||| ||||||  ||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  31318826 aaaaatgttttttctatcatgtgaaaatttgcacatgttaagaagtttaagatagaaattttgcattggaacttgtaca 31318748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 2571435 - 2571382
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  2571435 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 2571382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 8165813 - 8165753
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  8165813 atgtgcaaatttgcacatgttaagaagtttaaaatataaattttgtattggaacttgtaca 8165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 51401607 - 51401547
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    |||| |||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  51401607 atgtacaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 51401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 51618214 - 51618154
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| |||||||| |||| |||| ||||||||||||| ||||||    
T  51618214 atgtgcaaatttgcacatgttaagaagtttcaaattgtaactttgcattggaacttgtaca 51618154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 38277500 - 38277448
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||| ||||||  ||||||| ||||||||||||||| ||||||| |||||||    
T  38277500 atgtgtaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaa 38277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 42180219 - 42180159
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||| ||||||  ||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  42180219 atgtgtaaatttgcacatgttaagaagtttaaaataaaaattttgtattggaacttgtaca 42180159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 46492354 - 46492414
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||| ||| ||| |||| |||||| |||||| ||||||||| ||| ||||||    
T  46492354 atgtgcaaattttcacacgttaagaaatttaaagtagtaactttgcattgaaacttgtaca 46492414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 54527717 - 54527777
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| |||| |||||||||  ||||||| |||||||| ||||||    
T  54527717 atgtgcaaatttgcacatgttaagaaatttaaaatataaattttgtattggaacttgtaca 54527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 9747484 - 9747431
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||  |||||||    
T  9747484 atgtgcaaattttcacatgttaagaagtttaaaatagtaattttgtcttggaac 9747431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 7757797 - 7757850
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  7757797 atgtgcaaatttacacatgttaagaaatttaaaatagtaactttgcattggaac 7757850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 29157821 - 29157898
Alignment:
Q  80 caaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 156  Q
    |||||| ||||||||| | ||||||||||||  ||||||| |||| ||| ||||||||| ||||||||||||| ||||    
T  29157821 caaaaagggtttttctatcatgtgcaaatttgcacatgttaagaaattttaaatagtaactttgcattggaacttgta 29157898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 38248431 - 38248484
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||||||| |||||||||    
T  38248431 atgtgcaaatttgcacatgttaagaaatttaaaatagtaattttacattggaac 38248484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 24729588 - 24729640
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  24729588 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaa 24729640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 34213961 - 34214013
Alignment:
Q  99 tgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    |||||||||||  ||||||| |||| ||||||||||||||||| |||||||||    
T  34213961 tgtgcaaatttgcacatgttaagaaatttaaaatagtaatttttcattggaac 34214013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 5583573 - 5583622
Alignment:
Q  102 gcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  5583573 gcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 5583622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 26003357 - 26003406
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 147  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| ||||    
T  26003357 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 26003406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 7720282 - 7720222
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  || |||| | |||||||| |||| ||||||| |||||||||||||||    
T  7720282 atgtgcaaatttgcacgtgttaaaaagtttaagatagaaattttgtattggaacgtgtaca 7720222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 8065290 - 8065238
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  |||||||    
T  8065290 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattggaa 8065238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 8770897 - 8770941
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 142  Q
    ||||||||||||  ||||||| ||||||||||| |||||||||||    
T  8770897 atgtgcaaatttgcacatgttaagaagtttaaagtagtaattttg 8770941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 15411633 - 15411677
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 142  Q
    ||||||||||||  ||||||| |||||||||||||||||| ||||    
T  15411633 atgtgcaaatttgcacatgttaagaagtttaaaatagtaactttg 15411677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 28014869 - 28014929
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  28014869 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 28014929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 14961657 - 14961727
Alignment:
Q  82 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    |||| ||||||||| | ||||||||||||  ||||| | ||||||||||||||||||||||| ||||||||    
T  14961657 aaaagggtttttctatcatgtgcaaatttgcacatgctaagaagtttaaaatagtaattttgtattggaac 14961727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 2161554 - 2161501
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  2161554 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 2161501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 9580120 - 9580180
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||| ||| ||||||    
T  9580120 atgtgcaaatttacacatgttaagaagtttaaaatagaaattttgtattgaaacttgtaca 9580180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 27874692 - 27874752
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  27874692 atgtgcaaatttgcacatgttaagaagtttaaaatacaaattttgtattggaacttgtaca 27874752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 3306066 - 3306115
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 147  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||    
T  3306066 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattg 3306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 5573453 - 5573400
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||||||||||||| || ||||||||| ||||    
T  5573453 atgtgcaaatttgtacatgttaagaagtttaaaataatacttttgcattagaac 5573400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 16445747 - 16445800
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  |||| || ||||||||||||||| ||||||| ||||||||    
T  16445747 atgtgcaaatttgcacatattaagaagtttaaaatagaaattttgtattggaac 16445800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 21369241 - 21369270
Alignment:
Q  118 tcagaagtttaaaatagtaattttgcattg 147  Q
    ||||||||||||||||||||||||||||||    
T  21369241 tcagaagtttaaaatagtaattttgcattg 21369270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 26364001 - 26364054
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||   |||||| |||| ||||||||||||| |||||||||||||    
T  26364001 atgtgcaaatttgcgcatgttaagaaatttaaaatagtaactttgcattggaac 26364054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 6818201 - 6818145
Alignment:
Q  82 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaa 137  Q
    |||| ||||||||| | ||||||||||||  ||||||| ||||||||||||||||||    
T  6818201 aaaagggtttttctatcatgtgcaaatttgtacatgttaagaagtttaaaatagtaa 6818145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 10129287 - 10129227
Alignment:
Q  82 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaatttt 141  Q
    |||| ||||||||| | ||||||||||||  ||||||| ||||||||||| ||||||||||    
T  10129287 aaaagggtttttctatcatgtgcaaatttgcacatgttaagaagtttaaagtagtaatttt 10129227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 38212955 - 38213015
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  |||| ||| ||||||    
T  38212955 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattgaaacttgtaca 38213015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 45006132 - 45006077
Alignment:
Q  102 gcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  45006132 gcaaatttgcacatgttaagaagtttaaaatag-aattttgtattggaacatgtaca 45006077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 4969940 - 4969880
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  4969940 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 4969880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 8091323 - 8091372
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 147  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||||||||    
T  8091323 atgtgcaaatttacacatgttaagaagtttaaaatagtaactttgcattg 8091372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 25709410 - 25709463
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||| ||||||||    
T  25709410 atgtgcaaatttgcacatgttaagaagtttaaaatagtaactttgtattggaac 25709463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 34270428 - 34270375
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  34270428 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 34270375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 44473523 - 44473576
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||| ||| ||||    
T  44473523 atgtgcaaatttgaacatgttaagaagtttaaaatagaaattttgtatttgaac 44473576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 46290177 - 46290124
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  46290177 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 46290124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 26037260 - 26037200
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  | ||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  26037260 atgtgcaaatttgcagatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 26037200  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 29398145 - 29398205
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    |||| |||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  29398145 atgttcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 29398205  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 33072148 - 33072096
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  33072148 atgtgcaaatttgtacatgttaagaaatttaaaatagtaactttgcattggaa 33072096  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 45501626 - 45501566
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  |||| || ||||||||||||||| ||||||| |||||||| ||||||    
T  45501626 atgtgcaaatttgcacatcttaagaagtttaaaatagaaattttgtattggaacttgtaca 45501566  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 33343155 - 33343102
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||| ||||||||    
T  33343155 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgtattggaac 33343102  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 34692521 - 34692461
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  34692521 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 34692461  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 14228137 - 14228190
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  14228137 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 14228190  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 17552598 - 17552651
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||||| |||||||||||    
T  17552598 atgtgcaaatttgcacatgttaagaaatttaaaatagtaattatgcattggaac 17552651  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 28943780 - 28943833
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  28943780 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 28943833  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 30591174 - 30591232
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 156  Q
    ||||||||||||  ||||||| |||||||| |||| |||||||||||||| ||| ||||    
T  30591174 atgtgcaaatttacacatgttaagaagttttaaatggtaattttgcattgtaacttgta 30591232  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 3398387 - 3398327
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  3398387 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 3398327  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 30839966 - 30839895
Alignment:
Q  81 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||| ||||||||| | ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  30839966 aaaaagggtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 30839895  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 36597746 - 36597693
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  36597746 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 36597693  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 23995427 - 23995487
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 158  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||  |||| ||| ||||||    
T  23995427 atgtgcaaatttgtacatgttaagaagtttaaaatagtaattttatattgaaacttgtaca 23995487  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 30893513 - 30893469
Alignment:
Q  106 attttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  30893513 attttcacatgttaagaagtttaaaatagtaactttgcattggaa 30893469  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 41350369 - 41350316
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 151  Q
    ||||||||||||  ||||||| ||||||||||| |||||||||||  |||||||    
T  41350369 atgtgcaaatttgcacatgttaagaagtttaaagtagtaattttgacttggaac 41350316  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 30893796 - 30893752
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 142  Q
    ||||||||||||  ||||||| |||||||||||||||||| ||||    
T  30893796 atgtgcaaatttgcacatgttaagaagtttaaaatagtaactttg 30893752  T

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Target: scaffold0192 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 13574 - 13623
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 147  Q
    ||||||||||||  ||||||| ||||||||||| |||||| |||||||||    
T  13574 atgtgcaaatttgcacatgttaagaagtttaaattagtaagtttgcattg 13623  T

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Target: scaffold0229 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 24538 - 24590
Alignment:
Q  98 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 150  Q
    ||||||||||||  ||||||  |||| |||||||||||||||||| |||||||    
T  24538 atgtgcaaatttacacatgtaaagaaatttaaaatagtaattttgtattggaa 24590  T

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