View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_3 (Length: 659)
Name: NF12634_low_3
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Original strand, 15798068 - 15798692
Alignment:
| Q |
18 |
ggagatagtgctgctattctttcgggcgctttaaatgtaccgatggtgctgaccggtcattcgcttggaagaaacaagctcgaacaacttcttaagcaag |
117 |
Q |
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| T |
15798068 |
ggagatagtgctgctattctttcgggtgctttaaatgtaccgatggtgctgaccggtcattcgcttggaagaaacaagctcgaacaacttcttaagcaag |
15798167 |
T |
|
| Q |
118 |
gacgccaatcgaaggaagatatcaattcaatgtataagatgatgaggaggatagaagcagaagaactttctcttgatgctgcagaacttgttattactag |
217 |
Q |
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| T |
15798168 |
gacgccagtcgaaggaagatatcaattcaatgtataagatgatgaggaggatagaagcagaagaactttcccttgatgctgcagaacttgttattactag |
15798267 |
T |
|
| Q |
218 |
tacaaaacaagaaattgaggagcagtggggactttatgatggattcgatgtcaagcttgagaaagtattgcgtgcgcgagccagacgtggtgttaattgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
15798268 |
tacaaaacaagaaattgaggagcagtggggactttatgatggattcgatgtcaagcttgagaaagtattgcgtgctcgagccagacgtggtgtcaattgt |
15798367 |
T |
|
| Q |
318 |
catggtcgatacatgccaaggatggcggtaatatgttaactgatgttgccttaaaatatactacatgagattaaatgttcaaattgaaattataatatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||| |
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| T |
15798368 |
catggtcgatacatgccaaggatggcggtaatatgttaactgatgttgccttaaaata---taaatgagattgaatgttcaaattgaagttataatattc |
15798464 |
T |
|
| Q |
418 |
cttcaaagttttggtgtgccnnnnnnncgctcttccagtttcacccttcatttaaacgattttatttacaactgtatcgtttttatacaatcaaataact |
517 |
Q |
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| T |
15798465 |
cttcaaagttttcgtgtgcc-ttttttcgctcttccattttcacccttcatttaaacgattttatttacaactgtatcgtttttatacaatcaaataact |
15798563 |
T |
|
| Q |
518 |
aaatttcttcaaataatcgcataaaaatttgtaactaccattatttttattgcgaaaagcatcacagatgtgcctgtttacgtgctagtgaatgagtatg |
617 |
Q |
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| T |
15798564 |
aaatttcttcaaataatctcataaaattttgtaacttccattatttttattgcgaaaagcatcacagatgttcctgtttgcgtgctagtgaatgagtatg |
15798663 |
T |
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| Q |
618 |
ttgttttc--tctgtttttgtattttcat |
644 |
Q |
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| T |
15798664 |
ttgttttctttctgtttttgtatcttcat |
15798692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 4e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 24 - 348
Target Start/End: Original strand, 39810703 - 39811027
Alignment:
| Q |
24 |
agtgctgctattctttcgggcgctttaaatgtaccgatggtgctgaccggtcattcgcttggaagaaacaagctcgaacaacttcttaagcaaggacgcc |
123 |
Q |
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||||||||| ||||||| || ||||| ||||| || ||||| || || |||||||| |||||||||||||| || |||||||||||||||||||| |||| |
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| T |
39810703 |
agtgctgctcttctttcaggtgctttgaatgtgccaatggttctcactggtcattcacttggaagaaacaaactagaacaacttcttaagcaagggcgcc |
39810802 |
T |
|
| Q |
124 |
aatcgaaggaagatatcaattcaatgtataagatgatgaggaggatagaagcagaagaactttctcttgatgctgcagaacttgttattactagtacaaa |
223 |
Q |
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|||| ||| ||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||||||| || |||||||||| |
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| T |
39810803 |
aatcttgggaggatatcaattcaacgtataagataatgagaaggatagaagcagaagagctttccctggatgctgcagaacttgtcatcactagtacaag |
39810902 |
T |
|
| Q |
224 |
acaagaaattgaggagcagtggggactttatgatggattcgatgtcaagcttgagaaagtattgcgtgcgcgagccagacgtggtgttaattgtcatggt |
323 |
Q |
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|||||||||||| || || ||||||||||||||||| || |||||||||||||| ||||| |||||||| || | || |||||||| |||||||||||| |
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| T |
39810903 |
acaagaaattgatgaacaatggggactttatgatgggtttgatgtcaagcttgaaaaagttttgcgtgcccgtgataggcgtggtgtcaattgtcatggt |
39811002 |
T |
|
| Q |
324 |
cgatacatgccaaggatggcggtaa |
348 |
Q |
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|| |||||||| || |||||||||| |
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| T |
39811003 |
cgttacatgcccagaatggcggtaa |
39811027 |
T |
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