View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12634_low_33 (Length: 215)

Name: NF12634_low_33
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12634_low_33
NF12634_low_33
[»] chr6 (3 HSPs)
chr6 (1-197)||(29046795-29046991)
chr6 (8-198)||(2442010-2442200)
chr6 (41-152)||(31208228-31208339)
[»] chr1 (6 HSPs)
chr1 (1-197)||(2887098-2887294)
chr1 (1-197)||(16824490-16824693)
chr1 (40-195)||(7384098-7384252)
chr1 (110-198)||(11075502-11075588)
chr1 (49-144)||(26479160-26479255)
chr1 (9-97)||(3621361-3621449)
[»] chr7 (4 HSPs)
chr7 (9-198)||(5464945-5465134)
chr7 (1-197)||(25828784-25828980)
chr7 (1-167)||(12501519-12501685)
chr7 (1-167)||(12527153-12527319)
[»] chr2 (4 HSPs)
chr2 (1-197)||(4653224-4653420)
chr2 (4-198)||(5964486-5964680)
chr2 (44-198)||(44440010-44440164)
chr2 (112-188)||(6571423-6571499)
[»] chr8 (4 HSPs)
chr8 (4-198)||(1758992-1759186)
chr8 (13-198)||(15243036-15243221)
chr8 (1-198)||(12562822-12563022)
chr8 (2-197)||(23589488-23589679)
[»] chr4 (4 HSPs)
chr4 (1-194)||(41940928-41941121)
chr4 (1-197)||(47924659-47924855)
chr4 (13-197)||(54258927-54259111)
chr4 (84-193)||(25969134-25969241)
[»] chr3 (5 HSPs)
chr3 (13-197)||(43445018-43445203)
chr3 (1-197)||(53590439-53590636)
chr3 (1-163)||(7321073-7321235)
chr3 (9-142)||(33460629-33460762)
chr3 (127-169)||(10877611-10877653)
[»] chr5 (2 HSPs)
chr5 (9-197)||(12292326-12292514)
chr5 (89-148)||(29048025-29048084)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 29046795 - 29046991
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    |||||||||||||||||||||||||  |||||||||||||| |||||||||||||||| | || |||||||| |||| ||| ||||||||||||||||||    
T  29046795 tacttccgctattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgaggaacaacgttggcgtattcaagatgtggtg 29046894  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
     |||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||    
T  29046895 tgaaagacctttttgttacatgatgaatgcacttcttacgattccaatcttggtttggacccacactcatcacgcctcttagctcatttgatccccc 29046991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 2442010 - 2442200
Alignment:
Q  8 gctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaaga 107  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||||||||   || ||| |||||||| ||||  ||||  ||||||||||||||||||    
T  2442010 gctattttgtttattacaggagtatcgtatgcttggtgttgaagaaacaatactatttttaaggatcaatattggtgtatctaagatgtggtgcgaaaga 2442109  T
Q  108 cctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccct 198  Q
    | ||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||| ||| || ||||||||||||||| |||||||||    
T  2442110 catttttgttacatgatgaatgcattttttactatcccaatattgatttggacccacattcatcatgcctcttagctcattagatccccct 2442200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 31208339 - 31208228
Alignment:
Q  41 tggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagacctttttgttacatgatgaatgcatttcttact 140  Q
    |||||||||||||| ||| | || ||| ||||||||||||| | |||  ||||  |||||||||||||||| || || ||||| || || ||| |||| |    
T  31208339 tggtgttggagaaataatattatttttaaggatcaacattggcttataaaagagatggtgcgaaagaccttcttcttgcatgacgagtgaattgcttatt 31208240  T
Q  141 atcccaatcttg 152  Q
    |||| |||||||    
T  31208239 atccaaatcttg 31208228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2887098 - 2887294
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||   || ||  ||||||||||||| ||||||||||||||||||    
T  2887098 tacttcctctattttgtttgttacaggagtatggtatgcttggtgttggagaaacaatactattttgtaggatcaacattggcgtattcaagatgtggtg 2887197  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||    
T  2887198 cgaaagacctttttgttacgtgatgaatgcattttttactatcccaatcttggtttggacccacactcatggcgcctcttagctcattggatccccc 2887294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 16824693 - 16824490
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgac-------gtattcaaga 93  Q
    ||||||| ||||||||||| ||||| ||||||| ||||| ||||||| ||||||||||    | |||||||||||||||||||       ||||||||||    
T  16824693 tacttcctctattttgtttgttacatgagtatgatatgcctggtgttcgagaaacaatactttttttgaggatcaacattgaccattgacgtattcaaga 16824594  T
Q  94 tgtggtgcgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatc 193  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||| |  ||||||||||||||||||||    
T  16824593 tgtggtgtgaaagacctttttgttacatgatgaatgcatttcttactatcctaatcttgatttggaaccacactcatcgtgcctcttagctcattggatc 16824494  T
Q  194 cccc 197  Q
    ||||    
T  16824493 cccc 16824490  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 7384098 - 7384252
Alignment:
Q  40 ttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagacctttttgttacatgatgaatgcatttcttac 139  Q
    |||||||||||||||||||   || || |||||||||||||  |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||     
T  7384098 ttggtgttggagaaacaattctattttggaggatcaacatttgcgtattcaagatgtggtgcgaaagacttttttgttatatgatgaatgcatttcttat 7384197  T
Q  140 tatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccc 195  Q
    |||| ||||| | ||||| ||||||||||| | || ||||||||||||||||||||    
T  7384198 tatctcaatcat-gtttggacccacactcatcgcgtctcttagctcattggatccc 7384252  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 11075502 - 11075588
Alignment:
Q  110 tttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccct 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| || | ||||||||||||||||||||||||||    
T  11075502 ttttagttacatgatgaatgcatttcttactatcccaatcttggtttgaa--cacacacatcgcgcctcttagctcattggatccccct 11075588  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 26479160 - 26479255
Alignment:
Q  49 gagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagacctttttgttacatgatgaatgcatttcttactatcc 144  Q
    |||||||||||| || |||||||||||||||||  ||||| |||||||||||| ||| |  |||||||||||||||||||| |||| |||||||||    
T  26479160 gagaaacaatgttatttttgaggatcaacattggtgtatttaagatgtggtgcaaaatatttttttgttacatgatgaatgtatttgttactatcc 26479255  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 3621449 - 3621361
Alignment:
Q  9 ctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtg 97  Q
    ||||||||||| | |||||| ||||||||||||| ||||||||| | |||   ||  |||||||||||||||| |||||||| ||||||    
T  3621449 ctattttgtttgtcacaagattatggtatgcttgatgttggagatataatactattgttgaggatcaacattggcgtattcatgatgtg 3621361  T

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Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 5465134 - 5464945
Alignment:
Q  9 ctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagac 108  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||   || ||| ||||||||||||| |||||||||||||||||||||||||     
T  5465134 ctattttgtttattacaggagtatgatatgcttggtgttggagaaacaatactattttttaggatcaacattggcgtattcaagatgtggtgcgaaagat 5465035  T
Q  109 ctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccct 198  Q
    |||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  5465034 ctttttattacatgatgaatgcatttattactatcccaatctcggtttggacccacactcatcacacctcttagctcattggatccccct 5464945  T

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Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 25828980 - 25828784
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    ||||||| |||| |||||| ||||| |||||||||||| |||||||||||||||||||   || ||| ||||||||||||| ||||| ||||||||||||    
T  25828980 tacttcctctatgttgtttgttacaggagtatggtatggttggtgttggagaaacaatactattttttaggatcaacattgtcgtatccaagatgtggtg 25828881  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||| | ||||| ||||||||||| | |||||||||||||||||||||||||    
T  25828880 cgaaagacctttttgttacatgatgaatgtatttcttactatgacaatccttgtttgtacccacactcatcgcgcctcttagctcattggatccccc 25828784  T

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Target: chr7; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 12501519 - 12501685
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    ||||||| ||||||| ||| ||| | |||||||||||||||||||||||||||||||||| || |||| |||||| ||||| ||||||||||||||||||    
T  12501519 tacttcctctattttctttgttataggagtatggtatgcttggtgttggagaaacaatgttatttttgtggatcaccattggcgtattcaagatgtggtg 12501618  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacact 167  Q
    |||||||| |||| |||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  12501619 cgaaagactttttcgttaaatgatgaatgcatttcttactatcccaatcctggtttggacccacact 12501685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 12527153 - 12527319
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    |||||||  |||||| ||| || || |||||||||||||||||||||||||||||||||| || |||| |||||| ||||| ||||||||| ||||||||    
T  12527153 tacttcctttattttctttgttgcacgagtatggtatgcttggtgttggagaaacaatgttatttttgtggatcaccattggcgtattcaacatgtggtg 12527252  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacact 167  Q
    |||||||  |||| |||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  12527253 cgaaagaatttttcgttaaatgatgaatgcatttcttactatcccaatcctggtttggacccacact 12527319  T

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Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 4653224 - 4653420
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    ||||||| ||||||||||| || || |||||||||||||| |||||||||||||||||   || ||||||||||||||||| ||||||||||||||||||    
T  4653224 tacttcctctattttgtttgttgcaggagtatggtatgctcggtgttggagaaacaatactatttttgaggatcaacattggcgtattcaagatgtggtg 4653323  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| | |  ||||||||||||||||||||||    
T  4653324 cgaaagacatttttgttacataatgaatgcatttcttactatcccaatcatggtttggacccacactcatcgcatctcttagctcattggatccccc 4653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 5964680 - 5964486
Alignment:
Q  4 ttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcga 103  Q
    |||| ||||||||||| ||||| ||||||| |||||| |||||||||||||| ||   || ||| |||||||||||||||||||||||| ||| |||| |    
T  5964680 ttcctctattttgtttgttacaggagtatgatatgctcggtgttggagaaacgatactattttttaggatcaacattgacgtattcaaggtgtagtgcaa 5964581  T
Q  104 aagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccct 198  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||||| || ||| ||||||| | |   ||||||||||||||||||||||    
T  5964580 aagatctttttgttacaagatgaatgcatttcttactatccaaatcttggtctggaccaacactcatcgcatttcttagctcattggatccccct 5964486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 44440010 - 44440164
Alignment:
Q  44 tgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagacctttttgttacatgatgaatgcatttcttactatc 143  Q
    |||| |||||||||| | |  ||| ||||| |||||||||  ||| ||||||||||||||||||| ||||| ||  |||||||||| |||| ||||||||    
T  44440010 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaagacatttttattttatgatgaatgtattttttactatc 44440109  T
Q  144 ccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccct 198  Q
     |||| |||||||| | | ||||| | | || ||||| ||||||||||| |||||    
T  44440110 tcaatattggtttggatcaacacttatcgcgtctctttgctcattggatacccct 44440164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 6571499 - 6571423
Alignment:
Q  112 tttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcatt 188  Q
    |||||||||||| ||||||||||| |||||||||||||||||||   ||||||||||  | ||||||||||||||||    
T  6571499 tttgttacatgacgaatgcatttcatactatcccaatcttggttcagacccacactcgtcgcgcctcttagctcatt 6571423  T

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Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 1759186 - 1758992
Alignment:
Q  4 ttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcga 103  Q
    |||| ||||||||| | ||||| |||||| |||||||||||||||||||||||||   || |||| ||||||||||||  ||||||||||||||||| ||    
T  1759186 ttcctctattttgtatgttacatgagtatagtatgcttggtgttggagaaacaatactatttttgtggatcaacattggtgtattcaagatgtggtgtga 1759087  T
Q  104 aagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccct 198  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||    
T  1759086 aagacctttttgctacatgatgaatgcatttcttactattccaatcttggtttggacccatactcatcacgcctcttaactcattggatccccct 1758992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 15243036 - 15243221
Alignment:
Q  13 tttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagaccttt 112  Q
    ||||||| ||| | ||||||||||| |||||||||||||||||||||  || ||| ||| ||||||||||||||||||||||||||| |||||||| |||    
T  15243036 tttgtttgttataggagtatggtatacttggtgttggagaaacaatgctattttttagggtcaacattgacgtattcaagatgtggtccgaaagactttt 15243135  T
Q  113 ttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccct 198  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| | | ||||| ||||||||||||||||||    
T  15243136 ttgttacatgatgaatgcatctcttactatcccaatcctggtttggacccacactcatcgcacctctcagctcattggatccccct 15243221  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 12562822 - 12563022
Alignment:
Q  1 tacttccgctattttgtttatt---acaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtg 97  Q
    ||||||| ||||||||||| ||   | |||||||||||||||||||||||    ||||||| | || ||| |||||||||||||  |||||||| |||||    
T  12562822 tacttcctctattttgtttgttgttataagagtatggtatgcttggtgttaagaaaacaatattattttttaggatcaacattggtgtattcaatatgtg 12562921  T
Q  98 gtgcgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    ||  |||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||    
T  12562922 gtatgaaagatctttttgttacatgatgaatgcatttcttattatcccaatcttcgtttggacccacactcatcacgcctcttagctcattgtatccccc 12563021  T
Q  198 t 198  Q
    |    
T  12563022 t 12563022  T

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Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 23589488 - 23589679
Alignment:
Q  2 acttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgc 101  Q
    |||||| |||||||| || ||||| || |||||||||||||| |||||||||||||||  | |||| ||||||| |||||    |||||| |||||||||    
T  23589488 acttcctctattttgcttgttacaggattatggtatgcttggggttggagaaacaatgcta-gttttaggatcaccattgg---attcaatatgtggtgc 23589583  T
Q  102 gaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| | |||| |||| |||||||||||||||    
T  23589584 gaaagacttttttgttacatgatgaatgcatttcttaccatcccaatcctggtttggacccacactcatcgcgccccttaactcattggatccccc 23589679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 41941121 - 41940928
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    |||||| ||||||||  |||| ||||||||||||||| ||||||||||||||||||||   || ||| | | |||||||||  |||||||||||||||||    
T  41941121 tacttctgctatttttcttatcacaagagtatggtatacttggtgttggagaaacaatactattttttatggtcaacattggtgtattcaagatgtggtg 41941022  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatcc 194  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||  |||||||||||||||||||    
T  41941021 cgaaagatctttttgttacatgatgaatgcatttcttactatcccaatcttggtttggacccacactcgtcacatctcttagctcattggatcc 41940928  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 47924855 - 47924659
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    ||||||| |||||||||||  |||| |||||||||||||||||||||||||||||||    || ||| ||||||||||||| |||||||| ||||| |||    
T  47924855 tacttcctctattttgtttgctacaggagtatggtatgcttggtgttggagaaacaacactattttttaggatcaacattggcgtattcaggatgtagtg 47924756  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |  | || |||||||||||||||||||    
T  47924755 cgaaagacttttttgttagatgatgaatgcatttcttactatcccaatcttggtttggacccacactcatcgtgtcttttagctcattggatccccc 47924659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 54258927 - 54259111
Alignment:
Q  13 tttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagaccttt 112  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||   || |||||||||||||||||  |||||||||||||||||||||||| ||||    
T  54258927 tttgtttgttacaggagtatggtatgcctggtgttggagaaacaatactatttttgaggatcaacattggtgtattcaagatgtggtgcgaaagatcttt 54259026  T
Q  113 ttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||| | ||||||||| ||||||||| |||||    
T  54259027 ttgttacatgatgaatgcatttcgtactatcccaatcttggttcggacccactctcatcgcgcctcttaactcattggagccccc 54259111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 25969134 - 25969241
Alignment:
Q  84 gtattcaagatgtggtgcgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagc 183  Q
    ||||||||||||||||| |||||||| |||| |||||||||| || ||||| |||||||| || |||||||||  |  ||||||||   |||||||||||    
T  25969134 gtattcaagatgtggtgtgaaagaccattttattacatgatgtatacattttttactatctcagtcttggttt--agacacactcattgcgcctcttagc 25969231  T
Q  184 tcattggatc 193  Q
    ||||||||||    
T  25969232 tcattggatc 25969241  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 43445018 - 43445203
Alignment:
Q  13 tttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagaccttt 112  Q
    ||||||| ||| | || |||||||||||||||||||||||||||||   || ||| |||||||||||||   |||||||||||| |||||||||||||||    
T  43445018 tttgtttgttataggattatggtatgcttggtgttggagaaacaatactattttttaggatcaacattggtatattcaagatgttgtgcgaaagaccttt 43445117  T
Q  113 tt-gttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    || |||| |  |||||||||||||||||||||||||| |||||||| ||||||||||| |||| || ||||||||||| |||||||    
T  43445118 tttgttaaacaatgaatgcatttcttactatcccaattttggtttggacccacactcatcacgtcttttagctcattgaatccccc 43445203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 53590636 - 53590439
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatg-tcatgtttgaggatcaacattgacgtattcaagatgtggt 99  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |  | ||| |||| |||||| |  ||||||||||||| ||    
T  53590636 tacttcctctattttgtttattacaggagtatggtatgcttggtgttggagaaacaatgctatttttttaggaccaacatcggtgtattcaagatgttgt 53590537  T
Q  100 gcgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
    |  |||||| ||||||||||||||||||||||||||||||||||  |||||| ||||| || || ||||| |  | |||||| |||||| ||||||||    
T  53590536 gtaaaagacatttttgttacatgatgaatgcatttcttactatctgaatcttagtttggactcatactcatcgtgtctcttaactcattagatccccc 53590439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 7321073 - 7321235
Alignment:
Q  1 tacttccgctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtg 100  Q
    ||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||   |  ||| ||||||||||| | |  | |||||||||| ||    
T  7321073 tacttcctctattctgttcattacaggagtatggtatgcttggtgttggagaaacaatactaatttttaggatcaacatcggcacagtcaagatgtgatg 7321172  T
Q  101 cgaaagacctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaaccca 163  Q
    |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||    
T  7321173 cgaaagacctttttgtcacatgatgaatgcattttttactatctcaatcttggtttggaccca 7321235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 33460762 - 33460629
Alignment:
Q  9 ctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttgaggatcaacattgacgtattcaagatgtggtgcgaaagac 108  Q
    ||||||||||| | |||||| ||||| ||| | ||||||||||||| ||||  || ||| ||||||||| |||||||| ||| ||||||||||| || ||    
T  33460762 ctattttgtttgtcacaagattatggcatgttgggtgttggagaaataatgctattttttaggatcaacgttgacgtactcatgatgtggtgcggaatac 33460663  T
Q  109 ctttttgttacatgatgaatgcatttcttactat 142  Q
     ||||  ||| ||||||||||||||| |||||||    
T  33460662 attttctttaaatgatgaatgcatttattactat 33460629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 10877611 - 10877653
Alignment:
Q  127 atgcatttcttactatcccaatcttggtttgaacccacactca 169  Q
    ||||||||||||||||| ||||||||||||| || ||||||||    
T  10877611 atgcatttcttactatctcaatcttggtttggactcacactca 10877653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 12292514 - 12292326
Alignment:
Q  9 ctattttgtttattacaagagtatggtatgcttggtgttggagaaacaatgtcatgtttg-aggatcaacattgacgtattcaagatgtggtgcgaaaga 107  Q
    ||||||||||| ||||| ||||||| ||||| || |||||||||||| |||  || |||  ||||||||||||| |||||||||||||||||||||||||    
T  12292514 ctattttgtttgttacaggagtatgatatgcctg-tgttggagaaaccatgctatttttttaggatcaacattggcgtattcaagatgtggtgcgaaaga 12292416  T
Q  108 cctttttgttacatgatgaatgcatttcttactatcccaatcttggtttgaacccacactcaacacgcctcttagctcattggatccccc 197  Q
      ||||||||||||||||||||||||||| | ||||| ||| || |  || | ||||||||| | || ||||||||| ||||||||||||    
T  12292415 gatttttgttacatgatgaatgcatttctcaatatcctaattttcgactggatccacactcaccgcgtctcttagcttattggatccccc 12292326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 29048025 - 29048084
Alignment:
Q  89 caagatgtggtgcgaaagacctttttgttacatgatgaatgcatttcttactatcccaat 148  Q
    ||||| ||| ||||||| ||||||| |||||||||| |||| |||| |||||||||||||    
T  29048025 caagaagtgatgcgaaaaaccttttcgttacatgataaatgtattttttactatcccaat 29048084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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