View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_4 (Length: 646)
Name: NF12634_low_4
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 17 - 619
Target Start/End: Original strand, 42144218 - 42144819
Alignment:
| Q |
17 |
acaatgttccttatggagtaaaaccatgtcaccaagaggagattcatttggtaaaatcaaatgctaaaactgaagtgatcaatggtgatatcaaccataa |
116 |
Q |
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| T |
42144218 |
acaatgttccttatggagtaaaaccatgtcaccaagaggagattcatttggtaaaatcaaatgctaaaactgaagtgatcaatggtgatatcaaccataa |
42144317 |
T |
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| Q |
117 |
ttccaatttcataacctctatgggattttctagctgtgctactagttgtttctggtggatttttatgattttgggtctagtacttagttttttaatttga |
216 |
Q |
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| T |
42144318 |
ttccaatttcataacctctatgggattttctagctgtgctactagttgtttctggtggatttttatgattttgggtctagtacttagttttttaatttga |
42144417 |
T |
|
| Q |
217 |
ttatgaaaagtgtaacttgggcttttaattaaccttttaggtgttacattacaacaagtagtatgtgttttatattttgttctaacataatctaatagtc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144418 |
ttatgaaaagtgtaacttgggcttttaattaaccttttaggtgttacattacaacaagtagtatgtgttttatattttgttctaacataatctaatagtc |
42144517 |
T |
|
| Q |
317 |
ttgtcaatttgttaattatctgtaaaatattatttccaatttcatgcatgattttttcattctgaatattttacatagtactgaatttacctatggtcaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
42144518 |
ttgtcaatttgttaattatctgtaaaatattatttccaatttcatgcatgattttttcattctgaatatattacatagtactgaattcacctatggtcaa |
42144617 |
T |
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| Q |
417 |
caaagaaactatgagggaccccctctctaatggaatgaatatgagagtaacgccaaagacaattacgtaattttttgcagacaattctgcacaactgcac |
516 |
Q |
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| T |
42144618 |
c-aagaaactatgagggaccccctctctaatggaatgaatatgagagtaacgccaaagacaattacgtaattttttgcagacaattctgcacaactgcac |
42144716 |
T |
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| Q |
517 |
tgatatctggttgaaaatcatatacacatggggactgtaatgtaatctgtgtaactattgtactactacacaatattaattaaaccacttggtctttggt |
616 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144717 |
tgaaatctggttgaaaatcatatacacatggggactgtaatgtaatctgtgtaactattgtactactacacaatattaattaaaccacttggtctttggt |
42144816 |
T |
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| Q |
617 |
gta |
619 |
Q |
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||| |
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| T |
42144817 |
gta |
42144819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 499 - 595
Target Start/End: Complemental strand, 28377520 - 28377423
Alignment:
| Q |
499 |
aattctgcacaactgcactgatatctggtt-gaaaatcatatacacatggggactgtaatgtaatctgtgtaactattgtactactacacaatattaa |
595 |
Q |
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||||||||||||||||||| ||| | || || ||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
28377520 |
aattctgcacaactgcactaataacaactttgacaatcatataaacatggggactgtaatgtaatctgtgtaactattatactagtgcacaatattaa |
28377423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 28377572 - 28377519
Alignment:
| Q |
17 |
acaatgttccttatggagtaaaaccatgtcaccaagaggagattcatttggtaa |
70 |
Q |
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|||||| ||| ||| ||| || ||||||| |||||||||||||||||||||||| |
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| T |
28377572 |
acaatgatccatattgagcaacaccatgtaaccaagaggagattcatttggtaa |
28377519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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