View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_5 (Length: 630)
Name: NF12634_low_5
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 177 - 620
Target Start/End: Complemental strand, 30243739 - 30243311
Alignment:
| Q |
177 |
ctagaaaacacacttacatatctaaaagtccggaaacttgataaatgtgatattttacaacttcaataccactagtcttacgcctagtattagttttcca |
276 |
Q |
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| T |
30243739 |
ctagaaaacacacttatatatctaaaagtccggaaacttgataaatgtgatattttacaacttcaataccactagtcttacgcctagtattagttttcca |
30243640 |
T |
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| Q |
277 |
tattatgatatttaatgtgactttgataccatgttaaatgaacttgaatctatcttaaaaactagtttaaatgatgacaaaatacatatatacatctaac |
376 |
Q |
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| T |
30243639 |
tattgtgatatttaatgtgactttgataccatgttaaatgaacttgaatctatcttaaaaactagtttaaatgatgacaaaatacatatatacatctaac |
30243540 |
T |
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| Q |
377 |
aactgatgaatagtaattaacctggaattgtaatacaacttcaatatatagttggaagattgatgagtgtaaccttggatcccttgtcatggtgtgtact |
476 |
Q |
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| T |
30243539 |
aactgatgaatagtaattaacctggaattgta---------------atagttggaagattgatgagtgtaaccttggatcccttgtcatggtgtgtact |
30243455 |
T |
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| Q |
477 |
actcggaggtgtacatgcgtagtagagaaccctgttgaagtgtcctggtgggaatattaaattggtgtccccctatgggttttgtgtagttgcattgttt |
576 |
Q |
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| T |
30243454 |
actcggaggtgtacatgcgtagtagagaaccctgttgaagtgtcctggtgggaatattaaattggtgtccccctatgggttttgtgtaattgcattgttt |
30243355 |
T |
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| Q |
577 |
tgaccacgaaaatgcattgctgcccacctcatattagccctttg |
620 |
Q |
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| T |
30243354 |
tgaccacgaaaatgcattgctggccacctcatattagccctttg |
30243311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 30244119 - 30244019
Alignment:
| Q |
1 |
atgacttttcttatggtgtagacatcattcatatcgtattattaattgattattatcacctacttcaaaacttagctactgaaccacacaccgacactac |
100 |
Q |
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| T |
30244119 |
atgacttttcttatggtgtagacatcatccatatcgtattattaattgattattatcacctacttcaaaacttagctactgaaccacacaccgacactac |
30244020 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
30244019 |
t |
30244019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 30243990 - 30243927
Alignment:
| Q |
97 |
ctacttcagaataatggattggatttcttcccagtttgattaccattaattatacgggacacat |
160 |
Q |
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| T |
30243990 |
ctacttcagaataatggattggatttcttcccagtttgattaccattaattatacgggacacat |
30243927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 582326 - 582284
Alignment:
| Q |
295 |
gactttgataccatgttaaatgaacttgaatct-atcttaaaa |
336 |
Q |
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| T |
582326 |
gactctgataccatgttaaatgaacttgaatctcatcttaaaa |
582284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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