View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12634_low_6 (Length: 532)
Name: NF12634_low_6
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 2223606 - 2223111
Alignment:
| Q |
18 |
caatatgcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223606 |
caatatgcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttagtt |
2223507 |
T |
|
| Q |
118 |
tgcttaattgtaagtttctttatatctcatgagtcaccattaattaaccatcaccttatgatctcgtgaaagtggcaccgctacaccgccactacaaagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223506 |
-gcttaattgtaagtttctttatatctcatgagtcaccattaattaaccatcaccttatgatctcgtgaaagtggcaccgctacaccgccactacaaagc |
2223408 |
T |
|
| Q |
218 |
accgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacctcatcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223407 |
accgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacctcatcac |
2223308 |
T |
|
| Q |
318 |
cacaacttccaccgactccaatttcactatccattttcataaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccctccttcac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223307 |
cacaacttccaccgactccaatttcactatccatcttcataaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccctccttcac |
2223208 |
T |
|
| Q |
418 |
ttcctccgccaacaacaagtgcagcctatcacggcaagcattcgccaccgtcataccaccatgaccgtcataaaccgcaaagaaatcataaccgcac |
514 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223207 |
ttcctccgccaacaacaagtgcaacctatcacggcaagcattcgccaccgtcataccaccatgaccgtcataaaccgcaaagaaatcataaccgcac |
2223111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University