View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_8 (Length: 501)
Name: NF12634_low_8
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 25 - 485
Target Start/End: Complemental strand, 43527651 - 43527190
Alignment:
| Q |
25 |
atagaaaataaaaggattggatg-tggctcaccatgcaagatacatcgaagcaaatatcagttttctataagaaactacacgtcacagatttgttacctc |
123 |
Q |
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| T |
43527651 |
atagaaaataaaaggattggatgatggctcgccatgaaagatacatcgaagcaaatatcagttttctataagaaactacacgtcacagatttgttacctc |
43527552 |
T |
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| Q |
124 |
agtccttgagtcccacatcatattaattgatagcagaaactcaactatat------ttgttagctttgcaccaaccattccatcattcatactagcaaca |
217 |
Q |
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| T |
43527551 |
agtccttgagtcccacatcatattaattgatagcagaaactcaactatatatatatttgttagctttgcaccaaccattccatcattcatacta-caaca |
43527453 |
T |
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| Q |
218 |
atttcatagtcaacatcttatt----ggcattttacgagcatgcatgcatggacttatc--agtcaccagtcacaaatccacaactaataatactttctt |
311 |
Q |
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| T |
43527452 |
atttcatagtcaacatcttattaattggcattttacgagcatgcatgcatggacttatcgcagtcaccagtcacaaatccacaactaataatactttctt |
43527353 |
T |
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| Q |
312 |
ggatactaaagctaacatgtaagttaaaaacaatagaacgctaactttagaatttctatgcggccaatgaaatcgggtttagggataaatattttcgtat |
411 |
Q |
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| T |
43527352 |
gaatcctaaagctaacatgtaagttaaaaacaatagaatgctaactttagaatttctatgcggccaatgaaatcgggttta---------------gtat |
43527268 |
T |
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| Q |
412 |
cagaagtgttggatccaga----atgtctggtcgatttgtggaggcaatataatggtgatcatctaccccggcccttt |
485 |
Q |
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| T |
43527267 |
cagaagtgttggatccagaatgtatgtctggtcgatttgtggaggcaatataatggtgatcatctaccccggcccttt |
43527190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 43542874 - 43542722
Alignment:
| Q |
106 |
tcacagatttgttacctcagtccttgagtcccacatcatattaattgatagcagaaac-tcaactatatttgttagctttgcaccaaccattccatcatt |
204 |
Q |
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| T |
43542874 |
tcacggatttattacctcggtcctcgagtcccgcatcatatt----gatagcagcaacctcaactatgttagctagctctgcaccaaccattccatcagt |
43542779 |
T |
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| Q |
205 |
catactagcaacaatttcatagtcaacatctt-----attggcattttacgagcatg |
256 |
Q |
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| T |
43542778 |
catactagcaacaatttcatagtctacatcttcagcaattggctttttacgagcatg |
43542722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 43542482 - 43542440
Alignment:
| Q |
415 |
aagtgttggatccagaatgtctggtcgatttgtggaggcaata |
457 |
Q |
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| T |
43542482 |
aagtgctggatccagaatgtctggtcgatttgtggaggcaata |
43542440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 43542569 - 43542513
Alignment:
| Q |
344 |
atagaacgctaactttagaatttctatgcggccaatgaaatcgggtttagggataaa |
400 |
Q |
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| T |
43542569 |
atagaatgctacctttagaatttcaatgcggccaatgaaaccgggtttggggataaa |
43542513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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