View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12634_low_9 (Length: 474)
Name: NF12634_low_9
Description: NF12634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12634_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 28853637 - 28854085
Alignment:
| Q |
1 |
tcagaagttcttaatggcgttataactattgtaaggcttaatagtgtaaacttcattggaagtgattagtatttttcttcattttgcccctctttcctag |
100 |
Q |
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| T |
28853637 |
tcagaagttcttaatggcgttataactattgtaaggcttaatagtggaaacttcattggaagtgattagtatttttcttcattttgcccctctttcctag |
28853736 |
T |
|
| Q |
101 |
tgcatgtaaaatctgttttgtcgggagaatgagaggataattgagaaagaaacactgatatgtggttgttgagatcatagtcacgtacagtttccgactt |
200 |
Q |
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| T |
28853737 |
tgcatgtaaaatctgttttgtcgggagaatgagaggataattgagaaagaaacactgatatgtggttgttgagatcatagtcacttacagtttccgactt |
28853836 |
T |
|
| Q |
201 |
tccgtcacaacatcgatttctgtagttatactggataatatattttcttttcccctaggggcggggagttgatcttgaatcttcttcatccatcaagcaa |
300 |
Q |
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| T |
28853837 |
tccgtc---acatcaatttctgtagttatactggataatatattttctttttccctaggggcggggagttgatcttgaatcttcttcatc---ctagcaa |
28853930 |
T |
|
| Q |
301 |
ttttagaccgttagggaaatcttctagttttgataggnnnnnnnaacgctgataattgttgagtttcattttcagtttgaaaacattagttagagttgca |
400 |
Q |
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| T |
28853931 |
ttttagaccgttagggaaatcttctagtattgataggttgttttaacgctgataattgttgagtttcattttaagtttgaaaacattagttagagttgca |
28854030 |
T |
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| Q |
401 |
tttagttaaagtttgtccgaattgcaatttatttttgaagggatcaaatggttat |
455 |
Q |
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| T |
28854031 |
tttagttaaagttagtccgaattgcaatttatttttgaagggatcaaatggttat |
28854085 |
T |
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