View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12635_high_1 (Length: 502)
Name: NF12635_high_1
Description: NF12635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12635_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 29091326 - 29091803
Alignment:
| Q |
18 |
atttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttcannnnnnnn |
117 |
Q |
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| T |
29091326 |
atttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttcatttttttt |
29091425 |
T |
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| Q |
118 |
nnnnnnactttgttatccttttctttctctaccatattcaccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggcacgc |
217 |
Q |
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| T |
29091426 |
gtttttactttgttatctttttctttctctaccatattcaccataacaaacaattgcccttatactatatggccaggcacactcgccggtgcaggcacgt |
29091525 |
T |
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| Q |
218 |
cagcgcttccatcaactggatttcagcttgactcaagtcaagctgcaaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactggttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091526 |
cagcgcttccatcaactggatttcagcttgactcaggtcaagctgcgaaactaacaagtgttccagggtggtcgggtcggatatgggcgaggactggttg |
29091625 |
T |
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| Q |
318 |
cacatttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcacttttc |
417 |
Q |
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| T |
29091626 |
cacatttgatgcatccggaattggcaaatgccaaacgggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcacttttc |
29091725 |
T |
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| Q |
418 |
gagattacaattggacaaggcgatcaacaagattactatgatgttagtatggttgatggatacaatctccctatgctt |
495 |
Q |
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| T |
29091726 |
gagattacaattggacaaggtgatcaacaagattactatgatgttagtatggttgatggatacaatctcccaatgctt |
29091803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 316 - 495
Target Start/End: Original strand, 29084285 - 29084464
Alignment:
| Q |
316 |
tgcacatttgatgcatccggaattggcaaatgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacctacttcacttt |
415 |
Q |
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|||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
29084285 |
tgcacatttgatgcattaggaattgacaagtgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacgtgatggacttt |
29084384 |
T |
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| Q |
416 |
tcgagattacaattggacaaggcgatcaacaagattactatgatgttagtatggttgatggatacaatctccctatgctt |
495 |
Q |
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| T |
29084385 |
tcgagattacaattggtcaaggtgatcaacaagattgctatgatgttagcatggttgatggatgcaatcttccaatgctt |
29084464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 29084004 - 29084201
Alignment:
| Q |
18 |
atttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaagtttcannnnnnnn |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29084004 |
atttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcctaagtttcatttatttt |
29084103 |
T |
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| Q |
118 |
nnnnnnactttgttatc-cttttctttctctaccatattcaccataacaaacaattgcccttatactatatggcccggcacactcgccggtgcaggca |
214 |
Q |
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||||| ||||| |||||| |||||| |||||||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||||| |
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| T |
29084104 |
gtttttactttattatcttttttctatctctagcatattcaccgtaacaaacaatttcccttatactatattgaccggcacactcgccggtgcaggca |
29084201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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