View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12635_low_1 (Length: 833)

Name: NF12635_low_1
Description: NF12635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12635_low_1
NF12635_low_1
[»] chr8 (4 HSPs)
chr8 (490-816)||(29270072-29270385)
chr8 (43-171)||(29270668-29270784)
chr8 (261-336)||(29270443-29270518)
chr8 (197-242)||(29270564-29270609)
[»] chr6 (85 HSPs)
chr6 (197-583)||(26059309-26059685)
chr6 (197-583)||(26079279-26079655)
chr6 (658-816)||(27714179-27714337)
chr6 (54-242)||(27682180-27682368)
chr6 (197-344)||(25486757-25486906)
chr6 (79-242)||(27715258-27715421)
chr6 (112-242)||(27695325-27695455)
chr6 (11-242)||(27589868-27590105)
chr6 (197-338)||(25548358-25548499)
chr6 (56-242)||(27674292-27674484)
chr6 (519-613)||(27714999-27715092)
chr6 (456-576)||(25486923-25487042)
chr6 (129-217)||(26146295-26146383)
chr6 (456-576)||(26146521-26146640)
chr6 (296-399)||(25514321-25514424)
chr6 (736-816)||(26628004-26628084)
chr6 (736-816)||(26733981-26734061)
chr6 (736-816)||(27702412-27702492)
chr6 (197-274)||(25514246-25514323)
chr6 (197-265)||(25583088-25583156)
chr6 (658-739)||(26627707-26627788)
chr6 (658-739)||(26733684-26733765)
chr6 (394-527)||(27703284-27703423)
chr6 (54-171)||(27607948-27608053)
chr6 (671-739)||(27702670-27702738)
chr6 (736-806)||(27652343-27652413)
chr6 (735-808)||(26640665-26640738)
chr6 (735-808)||(26746631-26746704)
chr6 (744-808)||(27422574-27422638)
chr6 (736-808)||(31291368-31291440)
chr6 (736-803)||(26828358-26828425)
chr6 (295-344)||(26146455-26146504)
chr6 (456-512)||(25583207-25583263)
chr6 (744-808)||(26966104-26966168)
chr6 (481-556)||(27423905-27423979)
chr6 (129-170)||(25486668-25486709)
chr6 (371-432)||(26852236-26852297)
chr6 (463-584)||(27661929-27662049)
chr6 (508-576)||(25986741-25986808)
chr6 (615-659)||(27714936-27714980)
chr6 (129-168)||(26059223-26059262)
chr6 (129-168)||(26079193-26079232)
chr6 (672-739)||(27660703-27660770)
chr6 (490-584)||(27079032-27079125)
chr6 (119-169)||(27657544-27657594)
chr6 (261-336)||(27715139-27715214)
chr6 (129-170)||(25514161-25514202)
chr6 (193-254)||(26638814-26638875)
chr6 (193-254)||(26744780-26744841)
chr6 (745-806)||(26890066-26890127)
chr6 (679-739)||(26650492-26650552)
chr6 (744-808)||(26651110-26651174)
chr6 (679-739)||(26756460-26756520)
chr6 (744-808)||(26757078-26757142)
chr6 (119-171)||(26805825-26805877)
chr6 (197-241)||(27607845-27607889)
chr6 (261-342)||(27703472-27703553)
chr6 (261-326)||(28782491-28782556)
chr6 (261-326)||(28789865-28789930)
chr6 (129-164)||(25583014-25583049)
chr6 (681-739)||(26807072-26807130)
chr6 (261-336)||(27682441-27682516)
chr6 (261-324)||(28795883-28795946)
chr6 (193-234)||(26626533-26626574)
chr6 (193-234)||(26732510-26732551)
chr6 (193-254)||(26876970-26877031)
chr6 (197-254)||(28795798-28795855)
chr6 (744-804)||(26631460-26631520)
chr6 (687-739)||(26639748-26639800)
chr6 (265-322)||(26650059-26650116)
chr6 (744-804)||(26737435-26737495)
chr6 (687-739)||(26745714-26745766)
chr6 (265-322)||(26756027-26756084)
chr6 (192-263)||(25077395-25077466)
chr6 (746-801)||(26853623-26853677)
chr6 (193-240)||(26888394-26888441)
chr6 (195-242)||(27657447-27657494)
chr6 (196-242)||(25077696-25077742)
chr6 (522-576)||(25514427-25514480)
chr6 (261-336)||(26852090-26852165)
chr6 (677-739)||(27419460-27419522)
chr6 (197-263)||(28789780-28789846)
chr6 (197-242)||(26659374-26659419)
chr6 (197-242)||(26765345-26765390)
chr6 (193-242)||(31287988-31288037)
[»] scaffold0349 (5 HSPs)
scaffold0349 (658-816)||(17607-17765)
scaffold0349 (79-242)||(16524-16686)
scaffold0349 (519-613)||(16852-16945)
scaffold0349 (615-659)||(16964-17008)
scaffold0349 (261-336)||(16730-16805)
[»] chr4 (19 HSPs)
chr4 (658-739)||(18675056-18675137)
chr4 (658-739)||(18685629-18685710)
chr4 (658-741)||(18683371-18683454)
chr4 (658-739)||(18719586-18719667)
chr4 (671-739)||(18693111-18693179)
chr4 (671-739)||(18650937-18651005)
chr4 (677-739)||(18726883-18726945)
chr4 (198-263)||(18652232-18652297)
chr4 (198-254)||(18686339-18686395)
chr4 (193-254)||(18676299-18676360)
chr4 (198-254)||(18720829-18720885)
chr4 (119-166)||(18686451-18686498)
chr4 (198-233)||(18696166-18696201)
chr4 (119-166)||(18696257-18696304)
chr4 (671-737)||(5082450-5082516)
chr4 (736-769)||(18674450-18674483)
chr4 (119-168)||(18676409-18676458)
chr4 (736-769)||(18692521-18692554)
chr4 (736-769)||(18719020-18719053)
[»] scaffold0003 (3 HSPs)
scaffold0003 (744-808)||(64725-64789)
scaffold0003 (481-556)||(63384-63458)
scaffold0003 (677-739)||(67841-67903)
[»] chr1 (2 HSPs)
chr1 (103-168)||(265145-265210)
chr1 (193-242)||(265038-265087)
[»] scaffold0419 (1 HSPs)
scaffold0419 (261-326)||(11009-11074)
[»] scaffold0277 (4 HSPs)
scaffold0277 (261-326)||(10269-10334)
scaffold0277 (193-241)||(1415-1463)
scaffold0277 (261-324)||(1311-1374)
scaffold0277 (197-263)||(10353-10419)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 490 - 816
Target Start/End: Complemental strand, 29270385 - 29270072
Alignment:
Q  490 gggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttgctgtttacgtcat 589  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||            ||||||||||||||||||||||||||||||    
T  29270385 gggtacataccttagtctaggtccattataaagttaaccgtcttctt-gttattctct------------tacaggtttgtgctttgctgtttacgtcat 29270299  T
Q  590 tatcattattataaaccattgagacatgatgcaaggcatgtgcaacatctcaattattgcaacactttataaatagtgccagatccaagatgaatggtgt 689  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270298 tatcattattataaaccattgagacatgatgcaaggcatgtggaacatctcaattattgcaacactttataaatagtgccagatccaagatgaatggtgt 29270199  T
Q  690 tacaaataagatccttatacttcgaaagcttaaatggttttaatcataatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgact 789  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270198 tacaaataagatccttatacttcgaaagcttaaatggttataatcataatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgact 29270099  T
Q  790 gtacattgtcaggaaaccacatgtagt 816  Q
    |||||||||||||||||||||||||||    
T  29270098 gtacattgtcaggaaaccacatgtagt 29270072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 29270784 - 29270668
Alignment:
Q  43 tgtgatctggaaccatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaat 142  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||            |||||||||||||||||||||    
T  29270784 tgtgatctggaaccatacaactttgtttcatacctcaaaattgaatgaactcattaaaacacaatgc------------gagaaaggacttttgaaaaat 29270697  T
Q  143 gaatggatccatgtggagtttaagttgga 171  Q
    |||||||||||||||||||||||||||||    
T  29270696 gaatggatccatgtggagtttaagttgga 29270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 29270518 - 29270443
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagagaaaggggagga 336  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||| || ||||||    
T  29270518 cttcattatcacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggagga 29270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 29270609 - 29270564
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  29270609 caaatgggaatccacgtgtggaatgagaaaagcaacacggatgagg 29270564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 85)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 197 - 583
Target Start/End: Original strand, 26059309 - 26059685
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatccttcattatcacaatttgtgcctcctcnnnnnnngc 296  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||                   
T  26059309 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattcattgatccttcattatcacaatttatgc--------------- 26059393  T
Q  297 aaagattggtggaagtggaagtttcagagaaaggggaggaggaggagggttttggtgacatggaggaggataaaatattgaagaatcctaataatagaaa 396  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||    
T  26059394 aaagattggtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatgtaatattgaagaatcctaataatagaaa 26059493  T
Q  397 gacgtggggtacattccttagtctaggtgcatcaaaaagcaacac------tgatgagaatgtggtattcagcagtgcacaagatgaaagaaagatgctg 490  Q
    ||| |||||||||||||||||||||||||||||||||||||||||       ||||||| ||   |||| |||||||||||||||||||||||||||  |    
T  26059494 gacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatggggatgagattgaaatattaagcagtgcacaagatgaaagaaagatgtgg 26059593  T
Q  491 ggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttgctgttta 583  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||| |||| | | ||||||||||||||| ||||||    
T  26059594 ggtacattcctcggtttaggtccatcataaagttaaccgtcttc-ttgttattctctcaatctcaacattgcaggtttgtgctttgatgttta 26059685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 197 - 583
Target Start/End: Original strand, 26079279 - 26079655
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatccttcattatcacaatttgtgcctcctcnnnnnnngc 296  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||                   
T  26079279 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattcattgatccttcattatcacaatttatgc--------------- 26079363  T
Q  297 aaagattggtggaagtggaagtttcagagaaaggggaggaggaggagggttttggtgacatggaggaggataaaatattgaagaatcctaataatagaaa 396  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||    
T  26079364 aaagattggtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatgtaatattgaagaatcctaataatagaaa 26079463  T
Q  397 gacgtggggtacattccttagtctaggtgcatcaaaaagcaacac------tgatgagaatgtggtattcagcagtgcacaagatgaaagaaagatgctg 490  Q
    ||| |||||||||||||||||||||||||||||||||||||||||       ||||||| ||   |||| |||||||||||||||||||||||||||  |    
T  26079464 gacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatggggatgagattgaaatattaagcagtgcacaagatgaaagaaagatgtgg 26079563  T
Q  491 ggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttgctgttta 583  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||| |||| | | ||||||||||||||| ||||||    
T  26079564 ggtacattcctcggtttaggtccatcataaagttaaccgtcttc-ttgttattctctcaatctcaacattgcaggtttgtgctttgatgttta 26079655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 658 - 816
Target Start/End: Complemental strand, 27714337 - 27714179
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataatttacgcaacttttctcta 757  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27714337 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataatttacgcaacttttctcta 27714238  T
Q  758 accaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagt 816  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27714237 accaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagt 27714179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 27682180 - 27682368
Alignment:
Q  54 accatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatcca 153  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |    
T  27682180 accatacaactttgtttcatacctcaaaattgaatgaactcattaaaacacaatgcgagtataatatagagaaaggacttttgaaaaatgaatggatcta 27682279  T
Q  154 tgtggagtttaagttggaggatcaagagaatagtgtttatgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  27682280 tgtggagtttaagttgaaggatcatgagaatagtgtttatgcacaaaggggaatccacgtgtggaatgagaaaagcaacacggaggagg 27682368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 197 - 344
Target Start/End: Original strand, 25486757 - 25486906
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatccttcattatcacaatt--tgtgcctcctcnnnnnnn 294  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||           
T  25486757 caaatcggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatccttcattatcacaatttatgtgcctcctctaaaaaa 25486856  T
Q  295 gcaaagattggtggaagtggaagtttcagagaaaggggaggaggaggagg 344  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25486857 gcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 25486906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 27715421 - 27715258
Alignment:
Q  79 gaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaa 178  Q
    ||||||| |||||||   ||||| |||||  |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||     
T  27715421 gaaattgtatgaactaggtaaaagacaatatgagtataatatggacaaaggacttttgaaaagtgaatggatccatgtggagtttaagttgaaggatcac 27715322  T
Q  179 gagaatagtgtttatgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  27715321 gagaatagtgtttatacacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggagg 27715258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 27695455 - 27695325
Alignment:
Q  112 gtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaagagaatagtgtttatgcacaaatgggaatccac 211  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||    
T  27695455 gtataatatggacaaaggacttttgaaaagtgaatggatccatgtggagtttaggtcgaaggatcacgagaatagtgtttatgcacaaatgggaatccac 27695356  T
Q  212 gtgtggaaggagaaaagcaacacggaggagg 242  Q
    |||||||| ||||||||||||||||||||||    
T  27695355 gtgtggaatgagaaaagcaacacggaggagg 27695325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 27590105 - 27589868
Alignment:
Q  11 atgaagatagattattgctaccgcttttggtctgtgatctggaaccatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcg 110  Q
    |||||||||||||||||  |||||||| | | ||||  |   || ||||||| ||||||||||||| |||||||||||||||||| ||||| |||||  |    
T  27590105 atgaagatagattattgtcaccgctttagctatgtgtaccttaagcatacaaatttgtttcataccccgaaattgaatgaactcagtaaaagacaatttg 27590006  T
Q  111 agtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaagagaatagtgttt------atgcacaaatggg 204  Q
    ||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||  || ||||   | |      |||||||||||||    
T  27590005 agtatataatggacaaaggacttttgaaaaatgaatggatccatgtggaatttaagttgaaggatcgtgacaatataatattcagaaatgcacaaatggg 27589906  T
Q  205 aatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  27589905 aatccacgtgtggaaagagaaaagcaacacggaggagg 27589868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 197 - 338
Target Start/End: Original strand, 25548358 - 25548499
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatccttcattatcacaatttgtgcctcctcnnnnnnngc 296  Q
    |||||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||| |||||||||       ||    
T  25548358 caaatgggaatccatgtgtggaaggagaaaagcaacatggaggggagtgtgagattcattgatccttcattattacaatttatgcctcctcaaaaaaagc 25548457  T
Q  297 aaagattggtggaagtggaagtttcagagaaaggggaggagg 338  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  25548458 aaagattggtggaagtgggagtttcagagaaaggggaggagg 25548499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 27674484 - 27674292
Alignment:
Q  56 catacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatg 155  Q
    ||||||| ||||||||||||| |||||||||||||||||  |||||  ||||  |||||||  |||||||||||||||||||||||||||||||||||||    
T  27674484 catacaaatttgtttcataccccgaaattgaatgaactcggtaaaaggcaatttgagtatataatggagaaaggacttttgaaaaatgaatggatccatg 27674385  T
Q  156 tggagtttaagttggaggatcaagagaatagtgttt------atgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||||||||| || ||||||  || ||||   | |      |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27674384 tggagtttaaggtgaaggatcgtgacaatataatattcagaaatgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggagg 27674292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 519 - 613
Target Start/End: Complemental strand, 27715092 - 27714999
Alignment:
Q  519 aaagttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttgctgtttacgtcattatcattattataaaccattgaga 613  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27715092 aaagttaatcgtcttctt-gttattctctcaatctcaagaatacaggtttgtgctttgctgtttacgtcattatcattattataaaccattgaga 27714999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 456 - 576
Target Start/End: Original strand, 25486923 - 25487042
Alignment:
Q  456 tattcagcagtgcacaagatgaaagaaagatgctgggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtca 555  Q
    |||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||    
T  25486923 tattaagcagtgcgcaagatgaaagaaagatgttgggtacattccttagtctaggtccatcataaagttaaccgtcttc-ttgttattctctcaatctca 25487021  T
Q  556 agaatacaggtttgtgctttg 576  Q
    | | | |||||||||||||||    
T  25487022 acattgcaggtttgtgctttg 25487042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 26146295 - 26146383
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaagagaatagtgtttatgcacaaatgggaatccacgtgtgg 217  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  26146295 gacttttgaaaaaggaatggatccatgtggagtttaagttgaaggatcacgagaatagtgtttatgcacaaatgggaatccacgtgtgg 26146383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 456 - 576
Target Start/End: Original strand, 26146521 - 26146640
Alignment:
Q  456 tattcagcagtgcacaagatgaaagaaagatgctgggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtca 555  Q
    |||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||    
T  26146521 tattaagcagtgcgcaagatgaaagaaagatgttgggtacattccttagtctaggtccatcataaagttaaccgtcttc-ttgttattctctcaatctca 26146619  T
Q  556 agaatacaggtttgtgctttg 576  Q
    | | | |||||||||||||||    
T  26146620 acattgcaggtttgtgctttg 26146640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 25514321 - 25514424
Alignment:
Q  296 caaagattggtggaagtggaagtttcagagaaaggggaggaggaggagggttttggtgacatggaggaggataaaatattgaagaatcctaataatagaa 395  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||  ||||||||| ||||||||||||||||    
T  25514321 caaaaattggtggaagtgggagtttcagagaaaggggaggaggaggagggttttagtgacacggaggaggatgtaatattgaacaatcctaataatagaa 25514420  T
Q  396 agac 399  Q
    ||||    
T  25514421 agac 25514424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 736 - 816
Target Start/End: Original strand, 26628004 - 26628084
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagt 816  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  26628004 taatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagt 26628084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 736 - 816
Target Start/End: Original strand, 26733981 - 26734061
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagt 816  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  26733981 taatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagt 26734061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 736 - 816
Target Start/End: Complemental strand, 27702492 - 27702412
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagt 816  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  27702492 taatttacgcaacttttctctaaccaaaactaagtattttcttgttttttgactgtacattgtcaggaaacgacatgtagt 27702412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 25514246 - 25514323
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatccttcattatcacaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  25514246 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattaattgatccttcattatcacaa 25514323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 25583088 - 25583156
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatccttca 265  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25583088 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggggggtgtgagattcattgatccttca 25583156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 658 - 739
Target Start/End: Original strand, 26627707 - 26627788
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  26627707 ataaatagtgccgaatccaagatgaatggtgttacaagtaagatccttatacttcgaaagcataaatgcttttaatcataat 26627788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 658 - 739
Target Start/End: Original strand, 26733684 - 26733765
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  26733684 ataaatagtgccgaatccaagatgaatggtgttacaagtaagatccttatacttcgaaagcataaatgcttttaatcataat 26733765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 527
Target Start/End: Complemental strand, 27703423 - 27703284
Alignment:
Q  394 aaagacgtggggtacattccttagtctaggtgcatcaaaaagcaacac------tgatgagaatgtggtattcagcagtgcacaagatgaaagaaagatg 487  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||       ||||||| ||   | || | || ||||||||||||||||| ||||    
T  27703423 aaagacatggggtacattccttagtctaggtgcatcaaaaagcaacacgcatggggatgagattgaaattttaaacaatgcacaagatgaaagaatgatg 27703324  T
Q  488 ctgggtacattccttggtctaggtccattataaagttaac 527  Q
      |||||||||||||||||||| ||||| |||||||||||    
T  27703323 tggggtacattccttggtctagctccatcataaagttaac 27703284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 27608053 - 27607948
Alignment:
Q  54 accatacaactttgtttcatacctcgaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatcca 153  Q
    |||||||||||||||||||||||||||||||||||  | ||| ||||| ||||||||||            |||| ||||||||||||||||||||||||    
T  27608053 accatacaactttgtttcatacctcgaaattgaatagattcagtaaaagacaatgcgag------------aaagaacttttgaaaaatgaatggatcca 27607966  T
Q  154 tgtggagtttaagttgga 171  Q
    ||||||||||||||||||    
T  27607965 tgtggagtttaagttgga 27607948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 671 - 739
Target Start/End: Complemental strand, 27702738 - 27702670
Alignment:
Q  671 gatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  27702738 gatccaagatgaatggttttacaagtaagatctttatacttcgaaagcataaatggttttaatcataat 27702670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 736 - 806
Target Start/End: Complemental strand, 27652413 - 27652343
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaac 806  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||    
T  27652413 taatatacgcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcaggaaac 27652343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 735 - 808
Target Start/End: Original strand, 26640665 - 26640738
Alignment:
Q  735 ataatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||||||||| | |||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||    
T  26640665 ataatttacggagcttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaacca 26640738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 735 - 808
Target Start/End: Original strand, 26746631 - 26746704
Alignment:
Q  735 ataatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||||||||| | |||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||    
T  26746631 ataatttacggagcttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaacca 26746704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 744 - 808
Target Start/End: Complemental strand, 27422638 - 27422574
Alignment:
Q  744 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||    
T  27422638 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaacca 27422574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 736 - 808
Target Start/End: Original strand, 31291368 - 31291440
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| || |||  |||| ||||||||||    
T  31291368 taatttacgcaacttttctctaacaaaaactaagtattttcttgttcttcgattgtgaattgccaggaaacca 31291440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 736 - 803
Target Start/End: Original strand, 26828358 - 26828425
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcagga 803  Q
    ||||||||  |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  26828358 taatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcagga 26828425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 26146455 - 26146504
Alignment:
Q  295 gcaaagattggtggaagtggaagtttcagagaaaggggaggaggaggagg 344  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26146455 gcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 26146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 25583207 - 25583263
Alignment:
Q  456 tattcagcagtgcacaagatgaaagaaagatgctgggtacattccttggtctaggtc 512  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  25583207 tattaagcagtgcacaagatgaaagaaagatgttgggtacattccttggtttaggtc 25583263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 744 - 808
Target Start/End: Original strand, 26966104 - 26966168
Alignment:
Q  744 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||| ||||    
T  26966104 gcaacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacacca 26966168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 556
Target Start/End: Complemental strand, 27423979 - 27423905
Alignment:
Q  481 aaagatgctgggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtcaa 556  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||  |||||||||||||||| ||||    
T  27423979 aaagatgttgggtacattccttggtctaggttcatcataaagttaaccg-ctttgttgttattctctcaatctcaa 27423905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 25486668 - 25486709
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25486668 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 25486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 26852236 - 26852297
Alignment:
Q  371 atattgaagaatcctaataatagaaagacgtggggtacattccttagtctaggtgcatcaaa 432  Q
    |||||||| ||| |||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  26852236 atattgaacaatactaatagttgaaagacttggggtacattccttagtctaggtgcatcaaa 26852297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 463 - 584
Target Start/End: Complemental strand, 27662049 - 27661929
Alignment:
Q  463 cagtgcacaagatgaaagaaagatgctgggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtcaagaatac 562  Q
    ||||| ||||||||||||||| |||  |||||||||||||| || |||| |   |||||||||||||||||  ||||||| |||||||| ||||   | |    
T  27662049 cagtggacaagatgaaagaaatatgtggggtacattccttgatccaggtgcgccataaagttaaccgtctt-gttgttatcctctcaatctcaactttgc 27661951  T
Q  563 aggtttgtgctttgctgtttac 584  Q
    ||||||||||||| ||||||||    
T  27661950 aggtttgtgctttactgtttac 27661929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 508 - 576
Target Start/End: Original strand, 25986741 - 25986808
Alignment:
Q  508 aggtccattataaagttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttg 576  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||| | | |||||||||||||||    
T  25986741 aggtccatcataaagttaaccgtcttc-ttgttattctctcaatctcaacattgcaggtttgtgctttg 25986808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 615 - 659
Target Start/End: Complemental strand, 27714980 - 27714936
Alignment:
Q  615 atgatgcaaggcatgtgcaacatctcaattattgcaacactttat 659  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  27714980 atgatgcaaggcatgtggaacatctcaattattgcaacactttat 27714936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 26059223 - 26059262
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26059223 gacttttgaaaaatgaatggatccatgtggagtttaagtt 26059262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 26079193 - 26079232
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26079193 gacttttgaaaaatgaatggatccatgtggagtttaagtt 26079232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 739
Target Start/End: Complemental strand, 27660770 - 27660703
Alignment:
Q  672 atccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    |||| ||||||||| |||||||| |||||||||||||||| |||||  |||||| |||||||||||||    
T  27660770 atcctagatgaatgttgttacaagtaagatccttatactttgaaagaataaatgcttttaatcataat 27660703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 584
Target Start/End: Original strand, 27079032 - 27079125
Alignment:
Q  490 gggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttgctgtttac 584  Q
    ||||||||||||| |||||||| |||||| | |||| || |||| || |||||||||||||| |||| | |  ||||||||||||||||||||||    
T  27079032 gggtacattcctttgtctaggtgcattatgaggttagccatcttgtt-gttattctctcaatctcaacattgaaggtttgtgctttgctgtttac 27079125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 27657594 - 27657544
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttg 169  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  27657594 atggacaaagaacttttgaaaaatgaatggatccatgtggagcttaagttg 27657544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 27715214 - 27715139
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagagaaaggggagga 336  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||| ||||||||||| || ||||||    
T  27715214 cttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggagga 27715139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 25514161 - 25514202
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagtttaagttgg 170  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  25514161 gacttttgaaaaatgaatggatacatgtggagtttaagttgg 25514202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 26638814 - 26638875
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattca 254  Q
    ||||| ||||||||||||||| |  ||||||||||||||||||||||||| ||||| |||||    
T  26638814 tgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattca 26638875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 26744780 - 26744841
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattca 254  Q
    ||||| ||||||||||||||| |  ||||||||||||||||||||||||| ||||| |||||    
T  26744780 tgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattca 26744841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 745 - 806
Target Start/End: Original strand, 26890066 - 26890127
Alignment:
Q  745 caacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaac 806  Q
    ||||||||||||||||||||||||  ||||  || || ||||||||||||||||||||||||    
T  26890066 caacttttctctaaccaaaactaaacatttattttttatttgactgtacattgtcaggaaac 26890127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 679 - 739
Target Start/End: Original strand, 26650492 - 26650552
Alignment:
Q  679 atgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||| |||||||| |||||||||||||||| |||| | |||||| |||||||||||||    
T  26650492 atgaatgttgttacaagtaagatccttatactttgaaaccataaatgcttttaatcataat 26650552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 808
Target Start/End: Original strand, 26651110 - 26651174
Alignment:
Q  744 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||| |||||| |||||||||||| | |||  ||||||||||| |||||||||||||||||||||    
T  26651110 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaacca 26651174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 679 - 739
Target Start/End: Original strand, 26756460 - 26756520
Alignment:
Q  679 atgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||| |||||||| |||||||||||||||| |||| | |||||| |||||||||||||    
T  26756460 atgaatgttgttacaagtaagatccttatactttgaaaccataaatgcttttaatcataat 26756520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 808
Target Start/End: Original strand, 26757078 - 26757142
Alignment:
Q  744 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||| |||||| |||||||||||| | |||  ||||||||||| |||||||||||||||||||||    
T  26757078 gcaagttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaacca 26757142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 26805825 - 26805877
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttgga 171  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  26805825 atggacaaagtactttcgaaaaatgaatggatccatgtggagcttaagttgga 26805877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 27607889 - 27607845
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggag 241  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||    
T  27607889 caaatgggaatccacgtgtggaatgagaaaagcaacacagaggag 27607845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 27703553 - 27703472
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagagaaaggggaggaggagga 342  Q
    |||||||||||||||||||||||||||       |||||||| ||||||| ||| ||||||||||| || ||| ||||||||    
T  27703553 cttcattatcacaatttgtgcctcctctaaaaaagcaaagatcggtggaaatgggagtttcagagacagaggaagaggagga 27703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 28782491 - 28782556
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagaga 326  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||| |||||||||||    
T  28782491 cttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagaga 28782556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 28789865 - 28789930
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagaga 326  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||| |||||||||||    
T  28789865 cttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagaga 28789930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 25583014 - 25583049
Alignment:
Q  129 gacttttgaaaaatgaatggatccatgtggagttta 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  25583014 gacttttgaaaaatgaatggatccatgtggagttta 25583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 739
Target Start/End: Original strand, 26807072 - 26807130
Alignment:
Q  681 gaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||| |||||||| |||||||||||||||| |||||| |||||| ||||| |||||||    
T  26807072 gaatgttgttacaagtaagatccttatactttgaaagcataaatgcttttagtcataat 26807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 27682441 - 27682516
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagagaaaggggagga 336  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||| | ||||||||||| || ||||||    
T  27682441 cttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagttggagtttcagagacagaggagga 27682516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 28795883 - 28795946
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcaga 324  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||| |||||||||    
T  28795883 cttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcaga 28795946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 26626533 - 26626574
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacac 234  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  26626533 tgcacaaatgggaatccatgtgttgaaggagaaaagcaacac 26626574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 26732510 - 26732551
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacac 234  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  26732510 tgcacaaatgggaatccatgtgttgaaggagaaaagcaacac 26732551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 26876970 - 26877031
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattca 254  Q
    ||||||||||||||||||||||| ||||||||||| || ||  ||||||| ||||| |||||    
T  26876970 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 26877031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 28795798 - 28795855
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattca 254  Q
    |||||||||||||||||| ||||||||||||||||| | ||||||  ||||| |||||    
T  28795798 caaatgggaatccacgtgaggaaggagaaaagcaacgcagaggagaatgtgatattca 28795855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 804
Target Start/End: Original strand, 26631460 - 26631520
Alignment:
Q  744 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaa 804  Q
    |||||||||||||||||||||| ||| |||| |||| |||| || |||||||| |||||||    
T  26631460 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaa 26631520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #69
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 739
Target Start/End: Original strand, 26639748 - 26639800
Alignment:
Q  687 tgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    |||||||| |||||||||||||||| |||| | |||||| |||||||||||||    
T  26639748 tgttacaagtaagatccttatactttgaaaacataaatgcttttaatcataat 26639800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #70
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 26650059 - 26650116
Alignment:
Q  265 attatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttca 322  Q
    |||||||||||||||||||||||       |||||||||||||||||||| |||||||    
T  26650059 attatcacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttca 26650116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #71
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 804
Target Start/End: Original strand, 26737435 - 26737495
Alignment:
Q  744 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaa 804  Q
    |||||||||||||||||||||| ||| |||| |||| |||| || |||||||| |||||||    
T  26737435 gcaacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaa 26737495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #72
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 739
Target Start/End: Original strand, 26745714 - 26745766
Alignment:
Q  687 tgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    |||||||| |||||||||||||||| |||| | |||||| |||||||||||||    
T  26745714 tgttacaagtaagatccttatactttgaaaacataaatgcttttaatcataat 26745766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #73
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 26756027 - 26756084
Alignment:
Q  265 attatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttca 322  Q
    |||||||||||||||||||||||       |||||||||||||||||||| |||||||    
T  26756027 attatcacaatttgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttca 26756084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #74
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 25077395 - 25077466
Alignment:
Q  192 atgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatcctt 263  Q
    ||||| ||| ||||||||| ||| |||||||||||||||||| ||| |||| ||||| ||||| | ||||||    
T  25077395 atgcaaaaaagggaatccatgtgcggaaggagaaaagcaacaaggatgaggatgtgatattcactaatcctt 25077466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #75
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 801
Target Start/End: Original strand, 26853623 - 26853677
Alignment:
Q  746 aacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcag 801  Q
    |||||||||||||||||||||||| | || ||||||||||||| || |||||||||    
T  26853623 aacttttctctaaccaaaactaag-aattacttgttctttgaccgtgcattgtcag 26853677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #76
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 26888394 - 26888441
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggagga 240  Q
    ||||||||| ||||||||||||| |||||||||| |||| ||||||||    
T  26888394 tgcacaaattggaatccacgtgttgaaggagaaaggcaagacggagga 26888441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #77
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 27657494 - 27657447
Alignment:
Q  195 cacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||||||||||||||||||| |||| |||||||||||| ||| ||||    
T  27657494 cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgagg 27657447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #78
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 25077696 - 25077742
Alignment:
Q  196 acaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||||| |||||||| ||| ||||||| ||||||||||||||||||    
T  25077696 acaaatgagaatccacatgttgaaggagtaaagcaacacggaggagg 25077742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #79
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 576
Target Start/End: Original strand, 25514427 - 25514480
Alignment:
Q  522 gttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttg 576  Q
    ||||||||||||||| |||||||||||||| |||| | | |||||||||||||||    
T  25514427 gttaaccgtcttctt-gttattctctcaatctcaacattgcaggtttgtgctttg 25514480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #80
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 26852090 - 26852165
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagagaaaggggagga 336  Q
    |||||||||||||||||||||||||||       |||||||||| |||||||   ||||||||||| || ||||||    
T  26852090 cttcattatcacaatttgtgcctcctctaaaaaagcaaagattgatggaagttagagtttcagagacagaggagga 26852165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #81
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 677 - 739
Target Start/End: Complemental strand, 27419522 - 27419460
Alignment:
Q  677 agatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||||| |||||||| |||||||||||||||| |||||| ||| |  || ||||||||||    
T  27419522 agatgaatgctgttacaagtaagatccttatactttgaaagcataagttcttataatcataat 27419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #82
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 28789780 - 28789846
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatcctt 263  Q
    |||||||||||||||||| | ||||||||||||||| | ||||||  ||||| |||||  |||||||    
T  28789780 caaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatcctt 28789846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #83
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 26659374 - 26659419
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||| |||||||| |||| ||||||||||||||||||||| ||||    
T  26659374 caaattggaatccatgtgttgaaggagaaaagcaacacggatgagg 26659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #84
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 26765345 - 26765390
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||| |||||||| |||| ||||||||||||||||||||| ||||    
T  26765345 caaattggaatccatgtgttgaaggagaaaagcaacacggatgagg 26765390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #85
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 31287988 - 31288037
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    |||||||||||||||||||||||  |||||||||| |||| | |||||||    
T  31287988 tgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggagg 31288037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 159; Significance: 3e-84; HSPs: 5)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 658 - 816
Target Start/End: Original strand, 17607 - 17765
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataatttacgcaacttttctcta 757  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17607 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataatttacgcaacttttctcta 17706  T
Q  758 accaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagt 816  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17707 accaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagt 17765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 16524 - 16686
Alignment:
Q  79 gaaattgaatgaactcattaaaacacaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagttggaggatcaa 178  Q
    ||||||| |||||||   ||||| |||||  |||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||||     
T  16524 gaaattgtatgaactaggtaaaagacaatatgagtataatatggacaaaggacttt-gaaaagtgaatggatccatgtggagtttaagttgaaggatcac 16622  T
Q  179 gagaatagtgtttatgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  16623 gagaatagtgtttatacacaaatgggagtccacgtgtggaatgagaaaagcaacacggaggagg 16686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 519 - 613
Target Start/End: Original strand, 16852 - 16945
Alignment:
Q  519 aaagttaaccgtcttctttgttattctctcaatgtcaagaatacaggtttgtgctttgctgtttacgtcattatcattattataaaccattgaga 613  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16852 aaagttaatcgtcttctt-gttattctctcaatctcaagaatacaggtttgtgctttgctgtttacgtcattatcattattataaaccattgaga 16945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 615 - 659
Target Start/End: Original strand, 16964 - 17008
Alignment:
Q  615 atgatgcaaggcatgtgcaacatctcaattattgcaacactttat 659  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  16964 atgatgcaaggcatgtggaacatctcaattattgcaacactttat 17008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 16730 - 16805
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagagaaaggggagga 336  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||| ||||||||||| || ||||||    
T  16730 cttcattatcacaatttgagcctcctctaaaaaagcaaagattggtggaagtgggagtttcagagacagaggagga 16805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 658 - 739
Target Start/End: Complemental strand, 18675137 - 18675056
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    |||||| ||||| ||||| ||||||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  18675137 ataaattgtgccggatcctagatgaatgttgttacaagtaagatccttatactttgaaagcataaatggttttaatcataat 18675056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 658 - 739
Target Start/End: Complemental strand, 18685710 - 18685629
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    |||||| ||||| ||||| ||||||||  |||||||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  18685710 ataaattgtgccggatcctagatgaattttgttacaagtaagatccttatactttgaaagcataaatggttttaatcataat 18685629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 658 - 741
Target Start/End: Complemental strand, 18683454 - 18683371
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataattt 741  Q
    |||||| ||||| ||||| | ||||||| |||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||    
T  18683454 ataaattgtgccggatcctacatgaatgttgttacaagtaagatccttatactttgaaagcataaattgttttaatcataattt 18683371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 658 - 739
Target Start/End: Complemental strand, 18719667 - 18719586
Alignment:
Q  658 ataaatagtgccagatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    |||||| ||||| ||||| ||||||||  |||||||| |||||||||||||||| ||||||  |||||||||||||||||||    
T  18719667 ataaattgtgccggatcctagatgaatattgttacaagtaagatccttatactttgaaagcaaaaatggttttaatcataat 18719586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 671 - 739
Target Start/End: Complemental strand, 18693179 - 18693111
Alignment:
Q  671 gatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||| ||||||||| |||||||| |||||||||||||| | |||||| ||||||||||||||||||||    
T  18693179 gatcctagatgaatgttgttacaagtaagatccttataccttgaaagcataaatggttttaatcataat 18693111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 671 - 739
Target Start/End: Complemental strand, 18651005 - 18650937
Alignment:
Q  671 gatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||| ||||||||| |||| ||| |||||||||||||||| |||||  ||||||||||||||||||||    
T  18651005 gatcctagatgaatgttgttgcaagtaagatccttatactttgaaagtataaatggttttaatcataat 18650937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 677 - 739
Target Start/End: Complemental strand, 18726945 - 18726883
Alignment:
Q  677 agatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||||  |||||||| |||||||||||||||| ||||||  |||||||||||||||||||    
T  18726945 agatgaatattgttacaagtaagatccttatactttgaaagcaaaaatggttttaatcataat 18726883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 18652297 - 18652232
Alignment:
Q  198 aaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatcctt 263  Q
    |||||||||||||||||| ||||||||||| ||||||| | |||| ||||| ||||||| ||||||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatcctt 18652232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 18686395 - 18686339
Alignment:
Q  198 aaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattca 254  Q
    |||||||||||||||||||||||||||||| ||||||| | |||| ||||| |||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattca 18686339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 18676360 - 18676299
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattca 254  Q
    |||| ||||||||||||||||||| |||||||||| ||||||| | |||| ||||| |||||    
T  18676360 tgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattca 18676299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 18720885 - 18720829
Alignment:
Q  198 aaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattca 254  Q
    |||||||||||||||||| ||||||||||| ||||||| | |||| ||||| |||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattca 18720829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 18686498 - 18686451
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaag 166  Q
    ||||| |||| |||||| ||||||||||||||| ||||||||||||||    
T  18686498 atggacaaagcacttttaaaaaatgaatggatctatgtggagtttaag 18686451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 18696201 - 18696166
Alignment:
Q  198 aaatgggaatccacgtgtggaaggagaaaagcaaca 233  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaaca 18696166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 18696304 - 18696257
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaag 166  Q
    ||||| |||| |||||| ||||||||||||||| ||||||||||||||    
T  18696304 atggacaaagcacttttaaaaaatgaatggatcaatgtggagtttaag 18696257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 671 - 737
Target Start/End: Original strand, 5082450 - 5082516
Alignment:
Q  671 gatccaagatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcata 737  Q
    ||||| ||||||| | |||||||| |||||||||||| ||| |||||  |||||| |||||||||||    
T  5082450 gatcctagatgaacgctgttacaagtaagatccttatgctttgaaagtataaatgcttttaatcata 5082516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 769
Target Start/End: Complemental strand, 18674483 - 18674450
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaag 769  Q
    |||||||| |||||||||||||||||||||||||    
T  18674483 taatttacacaacttttctctaaccaaaactaag 18674450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 18676458 - 18676409
Alignment:
Q  119 atggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||| |||| |||||| ||||||||||||||| |||||||||| |||||    
T  18676458 atggacaaagcacttttaaaaaatgaatggatctatgtggagttgaagtt 18676409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 769
Target Start/End: Complemental strand, 18692554 - 18692521
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaag 769  Q
    |||||||| |||||||||||||||||||||||||    
T  18692554 taatttacacaacttttctctaaccaaaactaag 18692521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 769
Target Start/End: Complemental strand, 18719053 - 18719020
Alignment:
Q  736 taatttacgcaacttttctctaaccaaaactaag 769  Q
    |||||||| |||||||||||||||||||||||||    
T  18719053 taatttacacaacttttctctaaccaaaactaag 18719020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 744 - 808
Target Start/End: Original strand, 64725 - 64789
Alignment:
Q  744 gcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaacca 808  Q
    |||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||    
T  64725 gcaacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaacca 64789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 556
Target Start/End: Original strand, 63384 - 63458
Alignment:
Q  481 aaagatgctgggtacattccttggtctaggtccattataaagttaaccgtcttctttgttattctctcaatgtcaa 556  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||  |||||||||||||||| ||||    
T  63384 aaagatgttgggtacattccttggtctaggttcatcataaagttaaccg-ctttgttgttattctctcaatctcaa 63458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 677 - 739
Target Start/End: Original strand, 67841 - 67903
Alignment:
Q  677 agatgaatggtgttacaaataagatccttatacttcgaaagcttaaatggttttaatcataat 739  Q
    ||||||||| |||||||| |||||||||||||||| |||||| ||| |  || ||||||||||    
T  67841 agatgaatgctgttacaagtaagatccttatactttgaaagcataagttcttataatcataat 67903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 265210 - 265145
Alignment:
Q  103 acaatgcgagtataacatggagaaaggacttttgaaaaatgaatggatccatgtggagtttaagtt 168  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  265210 acaatacgagtataatatggacaaaggacttttgaaaaatgaatggatccatttggaatttaagtt 265145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 265087 - 265038
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggagg 242  Q
    |||||||||||||||||||| ||  | |||||||||||||| ||||||||    
T  265087 tgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggagg 265038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 11009 - 11074
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagaga 326  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||| |||||||||||    
T  11009 cttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagaga 11074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 10334 - 10269
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcagaga 326  Q
    |||||||||||||||||| ||||||||       |||||||||||||||||||| |||||||||||    
T  10334 cttcattatcacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcagaga 10269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 1463 - 1415
Alignment:
Q  193 tgcacaaatgggaatccacgtgtggaaggagaaaagcaacacggaggag 241  Q
    |||||||||||||||||||||| ||| ||||||||||||| | ||||||    
T  1463 tgcacaaatgggaatccacgtgaggatggagaaaagcaacgcagaggag 1415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 1374 - 1311
Alignment:
Q  261 cttcattatcacaatttgtgcctcctcnnnnnnngcaaagattggtggaagtggaagtttcaga 324  Q
    ||||||||| |||||||| ||||||||       |||||||||||||||||||| |||||||||    
T  1374 cttcattattacaatttgagcctcctctgaaaaagcaaagattggtggaagtggtagtttcaga 1311  T

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Target: scaffold0277; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 10419 - 10353
Alignment:
Q  197 caaatgggaatccacgtgtggaaggagaaaagcaacacggaggagggtgtgagattcattgatcctt 263  Q
    |||||||||||||||||| | ||||||||||||||| | ||||||  ||||| |||||  |||||||    
T  10419 caaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatcctt 10353  T

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