View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12635_low_4 (Length: 264)
Name: NF12635_low_4
Description: NF12635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12635_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 29084035 - 29083776
Alignment:
| Q |
1 |
tattttatggttgtgtcctttggggaagaaat-gaaaatattgataaatggtgatgtagaaataatggatatataatgcttctcatatttgtaatataaa |
99 |
Q |
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| T |
29084035 |
tattttatggttgtgtcctttggggaagaaatagaaaatattgataaatggtgatgtagaaataatggatatataatgcttctcatatttgtaatataaa |
29083936 |
T |
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| Q |
100 |
gtatttgtgagcaatgatgagttatgagtttctttggtattaaaaaaccaaaacgttactttgctttgatgaaattcttagccgcaagatt-aactttat |
198 |
Q |
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| T |
29083935 |
ctatttgtgagcaatgatgaattatgagtttctttggtattaaaaaaccaaaacgttactttactttgatgaaattcttagccgcaagattaaactttat |
29083836 |
T |
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| Q |
199 |
gggtttgctattt----tattgtggatagagcctaacttagaagcaattctttgcctttgct |
256 |
Q |
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| T |
29083835 |
gggttaagtatttcttatattgtggat--agcctaacttagaagcaattctttgcctttgct |
29083776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29091357 - 29091102
Alignment:
| Q |
1 |
tattttatggttgtgtcctttggggaagaaat-gaaaatattgataaatggtgatgtagaaataatggatatataatgcttctcatatttgtaatataaa |
99 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| | |
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| T |
29091357 |
tattttatggttgtgtcctttgggaaagaaatagaaagaattgataatatgtgatgtagaaataatgcatatataatgtttctcatatttgtaatataga |
29091258 |
T |
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| Q |
100 |
gtatttgtgagcaatgatgagttatgagtttctttggtattaaaaaaccaaaacgttactttgctttgatgaaattcttagccgcaagattaactttatg |
199 |
Q |
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| T |
29091257 |
gtagttttgtcttatgatgaattatgagtttctttggtattaaaaaaccaaaacgttactttgctttgatgaaattcttagccgcaaaatgaactttatg |
29091158 |
T |
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| Q |
200 |
ggtttgcta----ttttattgtggatagagcctaacttagaagcaattctttgccttt |
253 |
Q |
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||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29091157 |
ggtttagtatttcttttattgtggat--agcctaacttagaagcaattctttgccttt |
29091102 |
T |
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