View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12636_high_3 (Length: 218)

Name: NF12636_high_3
Description: NF12636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12636_high_3
NF12636_high_3
[»] chr3 (2 HSPs)
chr3 (17-200)||(51120277-51120460)
chr3 (118-152)||(51112886-51112920)
[»] chr5 (4 HSPs)
chr5 (107-151)||(41886292-41886336)
chr5 (105-147)||(41900191-41900233)
chr5 (23-54)||(28660967-28660998)
chr5 (109-147)||(32268880-32268918)
[»] chr2 (1 HSPs)
chr2 (105-152)||(45244521-45244568)
[»] chr4 (7 HSPs)
chr4 (109-147)||(566754-566792)
chr4 (109-144)||(1524000-1524035)
chr4 (105-152)||(1537246-1537293)
chr4 (105-147)||(1488824-1488866)
chr4 (106-147)||(12120920-12120961)
chr4 (105-141)||(554097-554133)
chr4 (105-161)||(645445-645501)
[»] chr1 (1 HSPs)
chr1 (105-161)||(9582031-9582087)
[»] chr6 (3 HSPs)
chr6 (105-152)||(9412450-9412497)
chr6 (106-146)||(6403935-6403975)
chr6 (106-146)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (105-147)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (110-147)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 51120460 - 51120277
Alignment:
Q  17 gagaaggttggtgatagagaggaactgcttcgagacaacggatagacgtttcaagtagctgttgctgatgttaccgttgccatataggtgaggaatttga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120460 gagaaggttggtgatagagaggaactgcttcgagacaacggatagacgtttcaagtagctgttgctgatgttaccgttgccatataggtgaggaatttga 51120361  T
Q  117 agacacattcccaacagtcatcaggtaaatagaaatatgctgctgtaattgttgtcgtttttgtggaagaagaaaacaattgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51120360 agacacattcccaacagtcatcaggtaaatagaaatatgctgctgtaatggttgtcgtttttgtggaagaagaaaacaattgtt 51120277  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 51112920 - 51112886
Alignment:
Q  118 gacacattcccaacagtcatcaggtaaatagaaat 152  Q
    |||| ||||||||||||||||||||||||||||||    
T  51112920 gacatattcccaacagtcatcaggtaaatagaaat 51112886  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 41886336 - 41886292
Alignment:
Q  107 aggaatttgaagacacattcccaacagtcatcaggtaaatagaaa 151  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaatagaaa 41886292  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 41900233 - 41900191
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 147  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  41900233 tgaggaatttgaagacacattcccaacactcatctggtaaata 41900191  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 28660998 - 28660967
Alignment:
Q  23 gttggtgatagagaggaactgcttcgagacaa 54  Q
    ||||||||||||||||||||||||||||||||    
T  28660998 gttggtgatagagaggaactgcttcgagacaa 28660967  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 32268880 - 32268918
Alignment:
Q  109 gaatttgaagacacattcccaacagtcatcaggtaaata 147  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  32268880 gaatttgaagacacattcccaacactcatctggtaaata 32268918  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 45244568 - 45244521
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 152  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  45244568 tgaggaatttcaagacacattcccaacactcatcaggtaaatagaaat 45244521  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 566754 - 566792
Alignment:
Q  109 gaatttgaagacacattcccaacagtcatcaggtaaata 147  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  566754 gaatttgaagacacgttcccaacagtcatcaggtaaata 566792  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 1524035 - 1524000
Alignment:
Q  109 gaatttgaagacacattcccaacagtcatcaggtaa 144  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1524035 gaatttgaagacagattcccaacagtcatcaggtaa 1524000  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 1537293 - 1537246
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 152  Q
    |||||||| |||| |||||||||||||| |||||||||||||| ||||    
T  1537293 tgaggaatctgaatacacattcccaacactcatcaggtaaatataaat 1537246  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 1488866 - 1488824
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 147  Q
    |||||||||||| |||||||||||| || ||||||||||||||    
T  1488866 tgaggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 12120961 - 12120920
Alignment:
Q  106 gaggaatttgaagacacattcccaacagtcatcaggtaaata 147  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  12120961 gaggaatctgatgacacattcccaacactcatcaggtaaata 12120920  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 554097 - 554133
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcagg 141  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  554097 tgaggaatttgaagacaaattcccaacattcatcagg 554133  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 645445 - 645501
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaatatgctgctg 161  Q
    |||||||| ||||||||||| ||||||| |||| ||||||||| |||| ||| ||||    
T  645445 tgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctgcagctg 645501  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 9582031 - 9582087
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaatatgctgctg 161  Q
    ||||||||||||||||  ||||||||||||||| ||||||||| |||| || |||||    
T  9582031 tgaggaatttgaagacggattcccaacagtcattaggtaaataaaaatctgttgctg 9582087  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 9412450 - 9412497
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 152  Q
    ||||||||||||||| || ||||||||| |||||||||||||| ||||    
T  9412450 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 9412497  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 6403935 - 6403975
Alignment:
Q  106 gaggaatttgaagacacattcccaacagtcatcaggtaaat 146  Q
    ||||||||||||||| |||||||| ||||||||||| ||||    
T  6403935 gaggaatttgaagacgcattcccatcagtcatcaggcaaat 6403975  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 6433172 - 6433212
Alignment:
Q  106 gaggaatttgaagacacattcccaacagtcatcaggtaaat 146  Q
    ||||||| ||||||  |||||||||||||||||||||||||    
T  6433172 gaggaatctgaagatgcattcccaacagtcatcaggtaaat 6433212  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 17642656 - 17642614
Alignment:
Q  105 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 147  Q
    ||||||||||||||||| | |||||||| ||||||||||||||    
T  17642656 tgaggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  110 aatttgaagacacattcccaacagtcatcaggtaaata 147  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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