View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12636_low_1 (Length: 413)
Name: NF12636_low_1
Description: NF12636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12636_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 23 - 400
Target Start/End: Complemental strand, 7546641 - 7546267
Alignment:
| Q |
23 |
tagcctcctcccttgtgttaaaatatacacccccttcccctcttaagaaaaacatatttgaaaaattatgttcttctccagcaaaggatgattgaattat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
7546641 |
tagcctcctcccttgtgttaaaatatacacccccctcctctcttaagaaaaa--tatttgaaaaattatgttcttctccggcaaaagatgattgaattat |
7546544 |
T |
|
| Q |
123 |
attccccttcctcttatgttaaaatctacccaccattttttataagacacactcccctctcttgtaaacatttccattttaatataatcaaacattatgc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7546543 |
attccccttcctcttatgttaaaatctacccaccattttttataagacacactcccctctcttgtaaacatttccattttaatataatcaaacattatgc |
7546444 |
T |
|
| Q |
223 |
atatgtttttcttctattttgattcgcagtatcaataacatatatattatgttgccaaaaaacagatttacaaacatattattgagtggaagagagagta |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7546443 |
atatgtttttcttctattttgattcgcagtatcaataacatatatattatgttacc-aaaaacagttttacaaacatattattgagtggaagagagagta |
7546345 |
T |
|
| Q |
323 |
gtcaggaagatattctttagaatctttttaagccatagtattggactcgcaacactgagagttgtatgaagcacaggt |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7546344 |
gtcaggaagatattctttagaatcattttaagccatagtattggactcgcaacactgagagttgtatgaagcacaggt |
7546267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 56310099 - 56310040
Alignment:
| Q |
26 |
cctcctcccttgtgttaaaatatacacccccttcccctcttaagaaaaacatatttgaaaa |
86 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
56310099 |
cctcctctcttatgttaaaatatacaccccc-tcccctcttattcaaaacatatttgaaaa |
56310040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 33047250 - 33047201
Alignment:
| Q |
38 |
tgttaaaatatacacccccttcccctcttaagaaaaacatatttgaaaaa |
87 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
33047250 |
tgttaaaatatacactcccttcccctcttattcaaaacatattagaaaaa |
33047201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 26705702 - 26705642
Alignment:
| Q |
26 |
cctcctcccttgtgttaaaatatacacccccttcccctcttaagaaaaacatatttgaaaa |
86 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||| |||||||||| |||||||||| ||||| |
|
|
| T |
26705702 |
cctcctctcttatgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa |
26705642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 34923885 - 34923945
Alignment:
| Q |
26 |
cctcctcccttgtgttaaaatatacacccccttcccctcttaagaaaaacatatttgaaaa |
86 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||| |||||||||| |||||||||| ||||| |
|
|
| T |
34923885 |
cctcctctcttatgttaaaatatacactcccctcccctcttatttaaaacatattagaaaa |
34923945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 35751570 - 35751618
Alignment:
| Q |
38 |
tgttaaaatatacacccccttcccctcttaagaaaaacatatttgaaaa |
86 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||| ||||| |
|
|
| T |
35751570 |
tgttaaaatatacactcccctcccctcttaatcaaaacatattagaaaa |
35751618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University