View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12636_low_2 (Length: 370)
Name: NF12636_low_2
Description: NF12636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12636_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 58 - 370
Target Start/End: Original strand, 32334928 - 32335234
Alignment:
| Q |
58 |
atggtgtcttgccttacagtgaagatggttccaacatatagattactaattgaaacaaaatcagttcaatatgttctggaataatttgtacaaactcttc |
157 |
Q |
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| T |
32334928 |
atggggtcttgccttacagtgaagatgggtccaacatatagattactaattgaaataaaatcagttcaatatgttctagaataatttgcacaaactcttc |
32335027 |
T |
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| Q |
158 |
tcttctaaaagtatgtaataaataccataca-tttttaggtaacagctacacgttcttatatagtctgcaagaatcagaactgttgttaaaggttgttaa |
256 |
Q |
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| T |
32335028 |
tcttctaaaaatatataataaataccatacattttttaggtaacagctatacattcttatatagtctacaaaaatcagaac---tgctaaatgatgttaa |
32335124 |
T |
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| Q |
257 |
tttagatagagagagcttaccttatcacactgcattgcagtggtgagcctgtgagcaatgaatatggaagttcgattatttgataatgacttcaatgcac |
356 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32335125 |
tttagat----agagcttaccttatcacactgcatcgcagtggtgagcctgtgagcaatgaatatggaagttcgattgtttgataatgacttcaatgcac |
32335220 |
T |
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| Q |
357 |
tcaaaatctctgct |
370 |
Q |
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|||||||||||||| |
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| T |
32335221 |
tcaaaatctctgct |
32335234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 241 - 370
Target Start/End: Original strand, 32322857 - 32322984
Alignment:
| Q |
241 |
tgttaaaggttgttaatttagatagagagagcttaccttatcacactgcattgcagtggtgagcctgtgagcaatgaatatggaagttcgattatttgat |
340 |
Q |
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| T |
32322857 |
tgttaaaggatgttaatctagacagag--agcttacctcatcacactgcattgcagtggtgagcctgtgagcgatgaatatggaagttcgattagttgat |
32322954 |
T |
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| Q |
341 |
aatgacttcaatgcactcaaaatctctgct |
370 |
Q |
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| T |
32322955 |
actgacttcaatgcacttaaaatctctgct |
32322984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 32322681 - 32322765
Alignment:
| Q |
58 |
atggtgtcttgccttacagtgaagatggttccaacatatagattactaattgaaacaaaatcagttcaatatgttctggaataat |
142 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |
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| T |
32322681 |
atggtgtcttgccttacagtgaagatgagtccaacatatagattactaatcgaaacaaaatcagttatatgtgttctggaataat |
32322765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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