View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_high_11 (Length: 384)

Name: NF12637_high_11
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_high_11
NF12637_high_11
[»] chr3 (14 HSPs)
chr3 (18-369)||(23476734-23477085)
chr3 (115-268)||(23497280-23497433)
chr3 (18-190)||(23433622-23433794)
chr3 (266-365)||(23433795-23433894)
chr3 (272-365)||(23445736-23445829)
chr3 (75-189)||(23350254-23350371)
chr3 (158-232)||(23445658-23445729)
chr3 (300-365)||(23497438-23497503)
chr3 (140-201)||(23461614-23461675)
chr3 (140-201)||(23381878-23381939)
chr3 (17-67)||(23470477-23470527)
chr3 (140-201)||(23400522-23400583)
chr3 (140-201)||(23403028-23403089)
chr3 (140-201)||(23470745-23470806)
[»] chr8 (1 HSPs)
chr8 (153-199)||(15043103-15043149)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 23476734 - 23477085
Alignment:
Q  18 gaatcatgagaaatttaaaacaattattcatttgaaggattaaactctttctatatcaaaataaactaatatggaatttataattagaaagtagatgaga 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23476734 gaatcatgagaattttaaaacaattattcatttgaaggattaaactctttctatatcaaaataaactaatatggaatttataattagaaagtagatgaga 23476833  T
Q  118 agattcataccgattgaacagcaaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgctgaaggctgtaactcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23476834 agattcataccgattgaacagcaaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgctgaaggctgtaactcat 23476933  T
Q  218 cattataattttcctagccatcttcactttcattgttagaccaatcagacctgtcagaatattgattactgaattttaatttaccaatttccctaccagc 317  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23476934 cattataattttcctggccatcttcaatttcattgttagaccaataagacctgtcagaatattgattactgaattttaatttaccaatttccctaccagc 23477033  T
Q  318 cagatccgacttatgttctaacttatatacaggtaagatcccacaccctttg 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23477034 cagatccgacttatgttctaagttatatacaggtaagatcccacaccctttg 23477085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 115 - 268
Target Start/End: Original strand, 23497280 - 23497433
Alignment:
Q  115 agaagattcataccgattgaacagcaaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgctgaaggctgtaact 214  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||    
T  23497280 agaagattcataccaattgaacagcaaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgatgtaggttgtaact 23497379  T
Q  215 catcattataattttcctagccatcttcactttcattgttagaccaatcagacc 268  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23497380 catcattataatttccctggccatcttcactttcattgttagaccaatcagacc 23497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 23433622 - 23433794
Alignment:
Q  18 gaatcatgagaaatttaaaacaattattcatttgaaggattaaactctttctatatcaaaa-taaactaatatggaatttataattagaaagtagatgag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||  ||||||||||||||||||||| |||     
T  23433622 gaatcatgagaa-tttaaaacaattattcatttgaaggattaaactctttctataaaaaaaatcaactaataaagaatttataattagaaagtaggtgaa 23433720  T
Q  117 aagattcataccgattgaacagcaaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcac 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  23433721 aagattcataccgattgaacagcaaggatgtttctggtcatcttcattttcattgttggagcttatgccttcac 23433794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 23433795 - 23433894
Alignment:
Q  266 acctgtcagaatattgattactgaattttaatttaccaatttccctaccagccagatccgacttatgttctaacttatatacaggtaagatcccacaccc 365  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  23433795 acctgtcagaatattgagcactgaattttaatttaccaatttccctaccatccagatccgacttatgttctaagttatacacaggtaagatcccacaccc 23433894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 23445736 - 23445829
Alignment:
Q  272 cagaatattgattactgaattttaatttaccaatttccctaccagccagatccgacttatgttctaacttatatacaggtaagatcccacaccc 365  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||    
T  23445736 cagaatattgagcactgaattttaatttaccaatttccctaccatccagatctgacttatgttctaagttatatacaggtaagaccccacaccc 23445829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 23350254 - 23350371
Alignment:
Q  75 aaaataaactaatatggaatttataattagaaagtagatgagaagattcataccgattg---aacagcaaggatgtttctggtcatcttcattttcaatg 171  Q
    |||||||| |||||||||||||||||||  ||||| | ||| |||||||||||||||||   |||| |||||||||||||| ||||||||||||||| ||    
T  23350254 aaaataaaataatatggaatttataatttaaaagtgggtgaaaagattcataccgattgaacaacaccaaggatgtttctgatcatcttcattttcattg 23350353  T
Q  172 ttggagcttatgacttca 189  Q
    || ||||||  |||||||    
T  23350354 ttagagctttcgacttca 23350371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 23445658 - 23445729
Alignment:
Q  158 cttcattttcaatgttggagcttatgacttcacctccaattgctgaaggctgtaactcatcattataattttcct 232  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  23445658 cttctttttcattgttggagcttatgacttcacctccaattgctgaaggctgtaac---tcattataattttcct 23445729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 23497438 - 23497503
Alignment:
Q  300 accaatttccctaccagccagatccgacttatgttctaacttatatacaggtaagatcccacaccc 365  Q
    ||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  23497438 accaatttcccaaccatccagattcgacttatgttctaagttatatacaggtaagaccccacaccc 23497503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 23461614 - 23461675
Alignment:
Q  140 aaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgct 201  Q
    |||| |||| ||||| ||||||||||||| |||| |||||| ||||||||||||||||||||    
T  23461614 aaggttgttcctggttatcttcattttcattgttagagcttctgacttcacctccaattgct 23461675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 23381878 - 23381939
Alignment:
Q  140 aaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgct 201  Q
    |||| |||| || |||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  23381878 aaggttgttccttgtcatcttcattttcattgttggagcttctaccttcacctccaattgct 23381939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 23470477 - 23470527
Alignment:
Q  17 agaatcatgagaaatttaaaacaattattcatttgaaggattaaactcttt 67  Q
    ||||||||||||| |||||||||||| |||| |||||||||| || |||||    
T  23470477 agaatcatgagaattttaaaacaattcttcaattgaaggatttaaatcttt 23470527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 23400522 - 23400583
Alignment:
Q  140 aaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgct 201  Q
    |||| |||| ||||| |||||||| |||| |||| |||||| |||||||||||||| |||||    
T  23400522 aaggttgttcctggttatcttcatcttcattgttagagcttctgacttcacctccacttgct 23400583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 23403028 - 23403089
Alignment:
Q  140 aaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgct 201  Q
    |||| |||| |||||||| |||||||||| |||| |||||| |  |||||||||||||||||    
T  23403028 aaggttgttcctggtcatattcattttcattgtttgagcttcttccttcacctccaattgct 23403089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 23470745 - 23470806
Alignment:
Q  140 aaggatgtttctggtcatcttcattttcaatgttggagcttatgacttcacctccaattgct 201  Q
    |||| |||| ||| ||||||||||||||| ||||  ||||| || |||||||||||||||||    
T  23470745 aaggttgttcctgatcatcttcattttcattgttatagcttctgccttcacctccaattgct 23470806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 15043103 - 15043149
Alignment:
Q  153 gtcatcttcattttcaatgttggagcttatgacttcacctccaattg 199  Q
    |||||||||||||||| ||||||||||| |  |||||||||||||||    
T  15043103 gtcatcttcattttcattgttggagcttctaccttcacctccaattg 15043149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University