View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_high_12 (Length: 366)

Name: NF12637_high_12
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_high_12
NF12637_high_12
[»] chr7 (3 HSPs)
chr7 (7-269)||(3684292-3684554)
chr7 (104-269)||(3676119-3676292)
chr7 (270-348)||(3684138-3684216)
[»] chr6 (9 HSPs)
chr6 (112-152)||(9159140-9159180)
chr6 (112-152)||(9171248-9171288)
chr6 (112-152)||(7013266-7013306)
chr6 (112-152)||(7026202-7026242)
chr6 (303-345)||(212981-213023)
chr6 (111-152)||(7047252-7047293)
chr6 (120-152)||(7041918-7041950)
chr6 (196-248)||(9159225-9159277)
chr6 (196-248)||(9171151-9171203)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 3684554 - 3684292
Alignment:
Q  7 gcagcacagagcagcattcatggcagaagcagaccggtctcaactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactttgact 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3684554 gcagcacacagcagcattcatggcagaagcagaccggtctcaactccatggacttcaccacgggagaataatgaacccaacaatcgtggctactatgact 3684455  T
Q  107 atggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnnncctcattctcagcaagttgtccacctcagattcgtcgttacttttg 206  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||        | ||||||||||||||||||||||||||||||||||||||||||||    
T  3684454 atgggtacatgtaccctaaaaaggtcgttgctatcacgtgccatggaaaaaaaacttcattctcagcaagttgtccacctcagattcgtcgttacttttg 3684355  T
Q  207 aaaaatggtgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtgc 269  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  3684354 aaaaatggtgatgagaattggaaggcgttctctgtcatgtcagcgaaatgggaagacatgtgc 3684292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 104 - 269
Target Start/End: Complemental strand, 3676292 - 3676119
Alignment:
Q  104 actatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnnn-cctcattctcagcaagttgtccacctcagattcgtcgttact 202  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||         |||||||||||||||||||||||||||||||||||| |||||    
T  3676292 actatggctacatgtaccctaaaaaggtcgttgttgtcacatgccatggaaaaaacaacctcattctcagcaagttgtccacctcagattcgtcattact 3676193  T
Q  203 tttgaaaaatgg-------tgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtgc 269  Q
    |||||||| |||       | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  3676192 tttgaaaagtggtcatgactcatgagaattggaaggtgttctctgacatgtcagcaaaatgggaagatatgtgc 3676119  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 3684216 - 3684138
Alignment:
Q  270 ttagtggccaaagctttggttgatgatggcaggggcataaagttcttaggggagagcgagggtgatttgttgttagagg 348  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3684216 ttagtggccaaagctttggttgatggtggcaggggcataaagttcttaggggagagcgagggtgatttgttgttagagg 3684138  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 9159140 - 9159180
Alignment:
Q  112 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 152  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9159140 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 9159180  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 9171288 - 9171248
Alignment:
Q  112 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 152  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9171288 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 9171248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 7013306 - 7013266
Alignment:
Q  112 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 152  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  7013306 tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg 7013266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 7026242 - 7026202
Alignment:
Q  112 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 152  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  7026242 tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg 7026202  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 212981 - 213023
Alignment:
Q  303 ggcataaagttcttaggggagagcgagggtgatttgttgttag 345  Q
    ||||| || ||||||| ||||||||||||||||||||||||||    
T  212981 ggcatgaaattcttagtggagagcgagggtgatttgttgttag 213023  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 7047293 - 7047252
Alignment:
Q  111 ctacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 152  Q
    |||||||| |||| |||||||| |||||||||||||||||||    
T  7047293 ctacatgttccctgaaaaggtcattgctgtcacgtgccatgg 7047252  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 7041950 - 7041918
Alignment:
Q  120 ccctaaaaaggtcgttgctgtcacgtgccatgg 152  Q
    ||||| |||||||||||||||||||||||||||    
T  7041950 ccctataaaggtcgttgctgtcacgtgccatgg 7041918  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 9159225 - 9159277
Alignment:
Q  196 cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca 248  Q
    ||||||||||||||  |||||||||| ||||||||||| || ||| |||||||    
T  9159225 cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca 9159277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9171203 - 9171151
Alignment:
Q  196 cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca 248  Q
    ||||||||||||||  |||||||||| ||||||||||| || ||| |||||||    
T  9171203 cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca 9171151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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