View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_high_13 (Length: 365)
Name: NF12637_high_13
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 44574686 - 44574802
Alignment:
| Q |
168 |
atttttacaactttttatgatagtcttaaaattagttcctctagactacaaactcaaacttttactaacttcagacttttatttttgaaatattagaaaa |
267 |
Q |
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| T |
44574686 |
atttttacaactttttatgatagtcttaaaattagttcctctagactacaaactcaaacttttactaacttcagacttttatttttgaaatattagaaaa |
44574785 |
T |
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| Q |
268 |
atagactactggtggta |
284 |
Q |
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| T |
44574786 |
atagactactggtggta |
44574802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 44574562 - 44574683
Alignment:
| Q |
19 |
aataaatctttccctccaatgctaagacccacaaggatgtgagtcccaaagttctcgatgaatctgat-aaaaaggttaatttttcaagaacataaatta |
117 |
Q |
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| T |
44574562 |
aataaatctttccctccaatgctaagacccacaagaatgtgagtcccaaagttctcgatgaatctgataaaaaaggttaatatttcaagaacataaatta |
44574661 |
T |
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| Q |
118 |
aattaaggaacttcgtccgtat |
139 |
Q |
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| T |
44574662 |
aattaaggaacttcgtccgtat |
44574683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 44574904 - 44574970
Alignment:
| Q |
289 |
ctaacaaaaggatgatttaataattgaactatcaacgttgcacgactccgttcaatcaaattctctg |
355 |
Q |
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| T |
44574904 |
ctaacaaaaggatgatttaataattgaactatcaacgttgcacgactccgttcaatcaaattctctg |
44574970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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