View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12637_high_19 (Length: 319)
Name: NF12637_high_19
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 42222455 - 42222179
Alignment:
| Q |
18 |
aagatcttgaatcaggatctttgctaactttgttggaaatcttgaacattgccattgatgttgcatctgccatggactacttgcaccatgactgtgatcc |
117 |
Q |
| |
|
||||| |||| |||||||||| ||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42222455 |
aagattttgagtcaggatcttctctaaccttgttgcaaaggttaaacattgccattgatgttgcatctgccatggactacttgcaccatgattgtgatcc |
42222356 |
T |
|
| Q |
118 |
accaatagtccattgtgatctgaaacctgccaatgtcctactagatgaaaatatggttgcacatgtggcagattttggattggcaagatttctctctcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
42222355 |
accaatagtccattgtgatctgaaacctgccaatgtcctactagatgaggatatggttgcacatgtggcagattttggattggcaaggtttctttctcaa |
42222256 |
T |
|
| Q |
218 |
aatccatcatagaaacatagtagcactctggaactgaagggatcgatcggctatattgccccaggtacttactaatg |
294 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
42222255 |
aatccatcagagaaacataacagcactctagaactgaagggatcgatcggctatatcgcgccaggtacttactaatg |
42222179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 42210230 - 42209958
Alignment:
| Q |
18 |
aagatcttgaatcaggatctttgctaactttgttggaaatcttgaacattgccattgatgttgcatctgccatggactacttgcaccatgactgtgatcc |
117 |
Q |
| |
|
||||| |||| |||||||||| ||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42210230 |
aagattttgagtcaggatcttctctaaccttgttgcaaaggttaaacattgccattgatgttgcatctgccatggactacttgcaccatgactgtgaccc |
42210131 |
T |
|
| Q |
118 |
accaatagtccattgtgatctgaaacctgccaatgtcctactagatgaaaatatggttgcacatgtggcagattttggattggcaagatttctctctcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
42210130 |
accaatagtccattgtgatctgaaacctgtcaatgttctactagatgaagatatggttgcacatgtagcagattttggattggcaaggtttctctctcaa |
42210031 |
T |
|
| Q |
218 |
aatccatcatagaaacatagtagcactctggaactgaagggatcgatcggctatattgccccaggtacttact |
290 |
Q |
| |
|
||||||||| ||||||||| ||||| || |||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
42210030 |
aatccatcagagaaacataacagcaccctagaactgaagggatcaatcggctatatcgccccaggtacttact |
42209958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University