View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12637_high_30 (Length: 242)
Name: NF12637_high_30
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 39571208 - 39571420
Alignment:
| Q |
11 |
gcacagagaagtaaactctaatcatatagaatcaatccattataattgtcaaaaattcaattcattataatgatatgctaattagttgatatcagggcat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39571208 |
gcacagagaagtaaactctaatcatatagaatcaatccattataattgtcaaaaattcaattcattataatgatatgctaattagttgatatcggggcat |
39571307 |
T |
|
| Q |
111 |
atatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571308 |
atatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcaccgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatc |
39571407 |
T |
|
| Q |
211 |
atgaccatttttg |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39571408 |
atgaccatttttg |
39571420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 39585654 - 39585509
Alignment:
| Q |
78 |
taatgatatgctaattagttgatatcagggcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatc |
177 |
Q |
| |
|
|||| ||| |||||||||||||| | || |||||||||||| ||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
39585654 |
taattataagctaattagttgatgttagtgcatatatacatcacataattttgcatccaaatcaaaaagcctccaaagctccacctaatgcaaatatatc |
39585555 |
T |
|
| Q |
178 |
acattcttcagcactgcaccaagcttgatgatcatgaccatttttg |
223 |
Q |
| |
|
||| ||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
39585554 |
acaatcttcagtgttgcaccatgcttgatgattatgaccatttttg |
39585509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 39575425 - 39575310
Alignment:
| Q |
107 |
gcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgat |
206 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
39575425 |
gcatatatacatcacatatttttgcatcaaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttcagtgttgcaccaagctcgat |
39575326 |
T |
|
| Q |
207 |
gatcatgaccattttt |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39575325 |
gatcatgaccattttt |
39575310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 39582090 - 39581870
Alignment:
| Q |
12 |
cacagagaagtaaactctaatcatatagaatcaatccattataatt--gtcaaaaat---tcaattcattataatgatatgctaatta----gttgatat |
102 |
Q |
| |
|
|||||||||| || ||||||||| |||||||| ||||||||||||| |||||||| | ||| || | |||||||| |||||||| |||||| | |
|
|
| T |
39582090 |
cacagagaagaaagctctaatcaaatagaatcgatccattataattttgtcaaaaaaatataaatccactgtaatgataagctaattaattagttgatgt |
39581991 |
T |
|
| Q |
103 |
cagggcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagct |
202 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| || | ||||||||| |
|
|
| T |
39581990 |
tagtgcatatatacatcacataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagca |
39581891 |
T |
|
| Q |
203 |
tgatgatcatgaccatttttg |
223 |
Q |
| |
|
|||| ||||| || |||||| |
|
|
| T |
39581890 |
cgatggtcatggccgtttttg |
39581870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 39568508 - 39568603
Alignment:
| Q |
128 |
ttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatttttg |
223 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| | ||||||| |||||| ||||| || ||||||||||| | ||||||||||||||||||| |
|
|
| T |
39568508 |
ttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcaccaagcattatgatcatgaccatttttg |
39568603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 39565742 - 39565942
Alignment:
| Q |
23 |
aaactctaatcatatagaatcaatccattataatt--gtcaaaaat-tcaattcattataatgatatgctaattagttgatatcagggcatatatacatt |
119 |
Q |
| |
|
||||||||| || |||||| |||||| ||||||| |||||||| ||||| |||||||||||| |||||||||||||| | || || ||||||| | |
|
|
| T |
39565742 |
aaactctaacaatttagaattaatccactataattttgtcaaaaaaatcaatctattataatgataagctaattagttgatgttagtgcctatatacgta |
39565841 |
T |
|
| Q |
120 |
gcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatt |
219 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| || || |||||||||||||| ||||| || | ||||||||| |||| ||||| || || |
|
|
| T |
39565842 |
gcataatcttgcatcaaaactaaaaagcctccaaagcgcca---aacgcaaatatatcacactcttctgcgcagcaccaagcacgatggtcatggccgtt |
39565938 |
T |
|
| Q |
220 |
tttg |
223 |
Q |
| |
|
|||| |
|
|
| T |
39565939 |
tttg |
39565942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 39561138 - 39561229
Alignment:
| Q |
128 |
ttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatt |
219 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | | | ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
39561138 |
ttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgatcatggccatt |
39561229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University