View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_high_6 (Length: 468)

Name: NF12637_high_6
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_high_6
NF12637_high_6
[»] chr5 (5 HSPs)
chr5 (22-460)||(41886285-41886722)
chr5 (212-399)||(41900361-41900548)
chr5 (211-399)||(32268537-32268725)
chr5 (33-83)||(32268868-32268918)
chr5 (33-80)||(41900191-41900238)
[»] chr3 (3 HSPs)
chr3 (280-399)||(51763325-51763444)
chr3 (29-73)||(51120326-51120370)
chr3 (277-314)||(1657614-1657651)
[»] scaffold1155 (1 HSPs)
scaffold1155 (280-384)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (280-384)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (280-384)||(30584-30688)
[»] chr2 (1 HSPs)
chr2 (29-73)||(45244522-45244566)
[»] chr7 (4 HSPs)
chr7 (299-399)||(10169004-10169104)
chr7 (299-399)||(10176529-10176629)
chr7 (337-399)||(10615715-10615777)
chr7 (33-70)||(10616209-10616246)
[»] chr1 (2 HSPs)
chr1 (336-400)||(19467422-19467486)
chr1 (367-399)||(17352692-17352724)
[»] chr4 (8 HSPs)
chr4 (290-393)||(553767-553870)
chr4 (336-399)||(21833268-21833331)
chr4 (277-314)||(645194-645231)
chr4 (33-73)||(1488824-1488864)
chr4 (33-73)||(1537251-1537291)
chr4 (253-313)||(1545952-1546012)
chr4 (367-399)||(3437642-3437674)
chr4 (33-73)||(12120920-12120960)
[»] chr6 (6 HSPs)
chr6 (337-399)||(6423907-6423969)
chr6 (345-399)||(8913420-8913474)
chr6 (270-319)||(9412203-9412252)
chr6 (277-314)||(11935970-11936007)
chr6 (277-314)||(11947950-11947987)
chr6 (337-393)||(19633108-19633164)
[»] chr8 (3 HSPs)
chr8 (270-319)||(17635581-17635630)
chr8 (290-319)||(17642880-17642909)
chr8 (33-73)||(17642614-17642654)


Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 22 - 460
Target Start/End: Original strand, 41886285 - 41886722
Alignment:
Q  22 ttggtggtttctatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagacaaccatagttgcatgacatctttgtcagttgtctcgaaaca 121  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886285 ttggtggtttctatttacctgatgagtgttgggaatgtgtcttcaaattcctgaaagacaaccatagttgcatgacatctttgtcagttgtctcgaaaca 41886384  T
Q  122 attcttgtccatcaccaactgcatcagattctctctcacaatctgctatgatcaaagtcaaaccctcccttttcctcctcgtctactcagtagattcatc 221  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41886385 attcttgtccatcaccaaccgcatcagattctctctcacaatctgctgtgatcaaagtcaa-ccctcccttttcctcctcgtctactcagtagattcatc 41886483  T
Q  222 aatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatcttt 321  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886484 aatctcacctctctcgacctttctagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatcttt 41886583  T
Q  322 cgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtttgaatgtgcaatttatttatag 421  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  41886584 cgtatcaacgtattattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctctcatttgttagaatgtgcaatttatttatag 41886683  T
Q  422 tactgatctattcctcatctctgattgtttccctttgct 460  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  41886684 tactgacctattcctcatctctggttgtttccctttgct 41886722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 212 - 399
Target Start/End: Original strand, 41900361 - 41900548
Alignment:
Q  212 tagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatca 311  Q
    |||||| | |||||||||||| ||| | || ||  |||||  |||||||||||  ||||||||  | ||||||||| |||||||||||||||||||||||    
T  41900361 tagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaactcacatca 41900460  T
Q  312 ctcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 399  Q
    ||||| || ||  | ||| |  | || ||| ||  ||||||  ||| |||| |||||||||||||||||||||||||||||| |||||    
T  41900461 ctcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 399
Target Start/End: Complemental strand, 32268725 - 32268537
Alignment:
Q  211 gtagattcatcaatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatc 310  Q
    ||||||||| ||| |||||||| |||||||| ||  | |||   ||||| ||||  || |||||| | |||||||||  |||||||||||||||||| ||    
T  32268725 gtagattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtc 32268626  T
Q  311 actcaatctttcgtatcaacgtattattcccacaaatgggttg-tgagtttttgccaaaaagattacaactttgacctctctcatttgtt 399  Q
    ||||||||| ||  |  || | || |||||||||| |||||||  || ||||| | || ||||||||||||||||||||||||| |||||    
T  32268625 actcaatctctcaaacaaatgcatcattcccacaattgggttgcagacttttt-cgaagaagattacaactttgacctctctcacttgtt 32268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 32268918 - 32268868
Alignment:
Q  33 tatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagacaac 83  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  32268918 tatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaac 32268868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 41900191 - 41900238
Alignment:
Q  33 tatttacctgatgagtgttgagaatgtgtcttcaaattcctgaaagac 80  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagac 41900238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 51763325 - 51763444
Alignment:
Q  280 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 379  Q
    ||||||||  ||| |||||||||||||||||||| ||||| ||  | || | ||   |||| |||||||||||| |||||||| |  |||||||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  380 tttgacctctctcatttgtt 399  Q
    |||||| ||||||| |||||    
T  51763425 tttgacatctctcacttgtt 51763444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 51120326 - 51120370
Alignment:
Q  29 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 73  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  51120326 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 51120370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 1657651 - 1657614
Alignment:
Q  277 gccaaatctctaattttccattgaaactcacatcactc 314  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  1657651 gccaaatctctagttttccattgagactcacatcactc 1657614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  280 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 379  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  380 tttga 384  Q
    |||||    
T  1921 tttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 384
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  280 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 379  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  380 tttga 384  Q
    |||||    
T  8295 tttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  280 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 379  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  380 tttga 384  Q
    |||||    
T  30684 tttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 45244522 - 45244566
Alignment:
Q  29 tttctatttacctgatgagtgttgagaatgtgtcttcaaattcct 73  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  45244522 tttctatttacctgatgagtgttgggaatgtgtcttgaaattcct 45244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 399
Target Start/End: Original strand, 10169004 - 10169104
Alignment:
Q  299 gaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgt 398  Q
    |||||||||||||||| || |||| || ||| | |  |||||| ||||||||||| |||||||  |  |||| |||| ||||||||||||||||| ||||    
T  10169004 gaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgt 10169103  T
Q  399 t 399  Q
    |    
T  10169104 t 10169104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 399
Target Start/End: Original strand, 10176529 - 10176629
Alignment:
Q  299 gaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgt 398  Q
    |||||||||||||||| || |||| || ||| | |  |||||| ||||||||||| |||||||  |  |||| |||| ||||||||||||||||| ||||    
T  10176529 gaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgt 10176628  T
Q  399 t 399  Q
    |    
T  10176629 t 10176629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 10615777 - 10615715
Alignment:
Q  337 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 399  Q
    ||||| ||||||||||  ||| |||  || ||||||||||||||||||||||||||| |||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgtt 10615715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  33 tatttacctgatgagtgttgagaatgtgtcttcaaatt 70  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 400
Target Start/End: Original strand, 19467422 - 19467486
Alignment:
Q  336 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgttt 400  Q
    |||||| ||||||||||| |||||||  |  |||| |||||||||||||||||||||| ||||||    
T  19467422 attcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgttt 19467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 17352724 - 17352692
Alignment:
Q  367 aaaagattacaactttgacctctctcatttgtt 399  Q
    ||||||||||||| |||||||||||||||||||    
T  17352724 aaaagattacaacattgacctctctcatttgtt 17352692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 553870 - 553767
Alignment:
Q  290 ttttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctct 389  Q
    |||||||||||| |||||||||||| |||| ||  |  |||  |  |||||| ||||||||||| ||| |||  || |||| ||||||||||||||||||    
T  553870 ttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctct 553771  T
Q  390 ctca 393  Q
    ||||    
T  553770 ctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 21833268 - 21833331
Alignment:
Q  336 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 399  Q
    |||||| || |||||||| ||||||||||  |||| ||||| |||||||||||||||| |||||    
T  21833268 attcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgtt 21833331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 645231 - 645194
Alignment:
Q  277 gccaaatctctaattttccattgaaactcacatcactc 314  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  645231 gccaaatctctagttttccattgagactcacatcactc 645194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 1488824 - 1488864
Alignment:
Q  33 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 73  Q
    ||||||||||||||||| || ||||||||| ||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcct 1488864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 1537251 - 1537291
Alignment:
Q  33 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 73  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  1537251 tatttacctgatgagtgttgggaatgtgtattcagattcct 1537291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 1546012 - 1545952
Alignment:
Q  253 gtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcact 313  Q
    ||||| ||||||  || ||||||  ||||||||||| ||||||||||||||||||| ||||    
T  1546012 gtggtgacctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Original strand, 3437642 - 3437674
Alignment:
Q  367 aaaagattacaactttgacctctctcatttgtt 399  Q
    ||||||||||||||||||||||||||| |||||    
T  3437642 aaaagattacaactttgacctctctcagttgtt 3437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 12120920 - 12120960
Alignment:
Q  33 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 73  Q
    |||||||||||||||||||| ||||||||| ||| ||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcct 12120960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 6423969 - 6423907
Alignment:
Q  337 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 399  Q
    ||||||||||||||||| ||| |||  || |||| || ||||||||||||||||||| |||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 8913420 - 8913474
Alignment:
Q  345 aatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 399  Q
    |||||||||  ||||||  | |||||||||||||||||||||||||||| |||||    
T  8913420 aatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 9412252 - 9412203
Alignment:
Q  270 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 319  Q
    |||||||| |||||||||  |||||||||||||||| ||||||| |||||    
T  9412252 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatct 9412203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 11935970 - 11936007
Alignment:
Q  277 gccaaatctctaattttccattgaaactcacatcactc 314  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11935970 gccaaatctctagttttccattgagactcacatcactc 11936007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 11947950 - 11947987
Alignment:
Q  277 gccaaatctctaattttccattgaaactcacatcactc 314  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11947950 gccaaatctctagttttccattgagactcacatcactc 11947987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 19633164 - 19633108
Alignment:
Q  337 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctca 393  Q
    ||||||||||||||||| ||| |||  || |||  ||||||||||||||||||||||    
T  19633164 ttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctca 19633108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 17635581 - 17635630
Alignment:
Q  270 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 319  Q
    |||||| || ||||||||  ||||||||||||||||| ||||||||||||    
T  17635581 cttctctgcgaaatctctccttttccattgaaactcatatcactcaatct 17635630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 319
Target Start/End: Original strand, 17642880 - 17642909
Alignment:
Q  290 ttttccattgaaactcacatcactcaatct 319  Q
    ||||||||||||||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatct 17642909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 17642614 - 17642654
Alignment:
Q  33 tatttacctgatgagtgttgagaatgtgtcttcaaattcct 73  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcct 17642654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University