View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_low_1 (Length: 922)

Name: NF12637_low_1
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_low_1
NF12637_low_1
[»] chr1 (20 HSPs)
chr1 (488-922)||(9218761-9219195)
chr1 (27-440)||(9219243-9219655)
chr1 (492-922)||(9161852-9162282)
chr1 (488-922)||(9200245-9200679)
chr1 (488-922)||(9170678-9171112)
chr1 (488-922)||(9118166-9118600)
chr1 (488-922)||(9155940-9156374)
chr1 (488-646)||(9178936-9179094)
chr1 (18-139)||(9162578-9162699)
chr1 (558-904)||(9229664-9230010)
chr1 (579-819)||(1868269-1868509)
chr1 (597-823)||(1816126-1816352)
chr1 (30-122)||(9156784-9156876)
chr1 (30-122)||(9171392-9171484)
chr1 (30-122)||(9179374-9179466)
chr1 (708-819)||(1842789-1842900)
chr1 (30-137)||(9201067-9201174)
chr1 (597-823)||(1856692-1856918)
chr1 (315-440)||(9162334-9162459)
chr1 (365-435)||(9118043-9118113)
[»] chr7 (1 HSPs)
chr7 (599-640)||(37567636-37567677)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 488 - 922
Target Start/End: Complemental strand, 9219195 - 9218761
Alignment:
Q  488 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9219195 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcaaatattcacggaagaggaacttaagaaagccaccaaaaac 9219096  T
Q  588 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9219095 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgtcaaaaagtccaaaataa 9218996  T
Q  688 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 787  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9218995 tagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 9218896  T
Q  788 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaaca 887  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9218895 agaagttccttcgttggtgtatgaatttgttagcaacggaacactttttgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaaca 9218796  T
Q  888 cgtttaaggatagcagcagagacagctggtgcttt 922  Q
    |||||||||||||||||||||||||||||||||||    
T  9218795 cgtttaaggatagcagcagagacagctggtgcttt 9218761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 27 - 440
Target Start/End: Complemental strand, 9219655 - 9219243
Alignment:
Q  27 tacgaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcac 126  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9219655 tacgaatgtttttgtcctaatggacaatctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcac 9219556  T
Q  127 taagcatagcccacatatattgtcacaagttttagttaggattgaatcagttgcaaatactcgagtttgataaccgactctagaacaatatttagttaca 226  Q
    |||| ||| |||||||||||| |||||| || |||||| |||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||    
T  9219555 taagaataacccacatatattttcacaatttctagttaagattgaatcagt-gcgaatactcgagtttgataactgactctagaacaatttttagttaca 9219457  T
Q  227 tttacctaagtttaagtcgaactcaagattactaaaagggccgaagggttaagaccaggnnnnnnntatgattaaagtattcagcatgcatgttagctat 326  Q
    |||| |||| ||||||| |||||| ||| ||||||||||| ||||||||||||||||||       ||||||||| ||||||||||||||||||||||||    
T  9219456 tttatctaactttaagttgaactccagactactaaaagggtcgaagggttaagaccaggaaaaaaatatgattaaggtattcagcatgcatgttagctat 9219357  T
Q  327 tgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9219356 tgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc 9219257  T
Q  427 tatacttgacgtac 440  Q
    ||||||||||||||    
T  9219256 tatacttgacgtac 9219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 492 - 922
Target Start/End: Complemental strand, 9162282 - 9161852
Alignment:
Q  492 ggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaactacg 591  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  9162282 ggttctatattgctacaacagctatcaacaagagaagacacttcgcaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacg 9162183  T
Q  592 acgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataataga 691  Q
    | || |||||||||||||| |||||||||||||||||||||||||||||| | || || ||||||||||| |||||||| ||||| ||||||||||||||    
T  9162182 atgatagcttaatcatcggcagaggaggttttggtacagttttcaaaggagtcttaccagataacaaaatcgtcgctgtcaaaaaatccaaaataataga 9162083  T
Q  692 cgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaa 791  Q
     |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || || |||||||| |||||||||    
T  9162082 tgcaaatcaaattgagcagttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaa 9161983  T
Q  792 gttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaacacgtt 891  Q
    |||||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||||    
T  9161982 gttccttcgttggtgtatgaattcgttagcaatggtacacttttcgatttcatacataatactaaagataaagcaaacaatccaacatggaaaacacgtt 9161883  T
Q  892 taaggatagcagcagagacagctggtgcttt 922  Q
    ||| |||||||||||||||||| || |||||    
T  9161882 taaagatagcagcagagacagccggagcttt 9161852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 488 - 922
Target Start/End: Complemental strand, 9200679 - 9200245
Alignment:
Q  488 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 587  Q
    ||||||||| |||||| |||| |||||||| ||||||||||||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||     
T  9200679 tggtggttccattttggtacagcaactatctacaagagaagacacttctcaagcagcacaaatattcacagaagaggaacttaagaaagccaccaaaaaa 9200580  T
Q  588 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||| ||||| ||||||||||    
T  9200579 tacgacgaaagcttaatcatcggtagaggaggttttggtacagtttacaaaggagttttacctgataacaaaattgtcgctgtaaaaaaatccaaaataa 9200480  T
Q  688 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 787  Q
    | ||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||  |||| |||||| | |||||    
T  9200479 ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagac 9200380  T
Q  788 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaaca 887  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    |||||||||| |||| |||||| |||||||||||    
T  9200379 agaagttccttcattagtgtacgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaacaaataatccaacatggaaaaca 9200280  T
Q  888 cgtttaaggatagcagcagagacagctggtgcttt 922  Q
    ||||||||||||||||| ||||||||||| |||||    
T  9200279 cgtttaaggatagcagcggagacagctggagcttt 9200245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 488 - 922
Target Start/End: Complemental strand, 9171112 - 9170678
Alignment:
Q  488 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 587  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9171112 tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac 9171013  T
Q  588 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 687  Q
    ||||| |||||||||||||| || |||||||||||||||||||||| ||||||| |||| || || |||||||| |||||||| ||||| ||||||||||    
T  9171012 tacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggagttttacctgacaacaaaatcgtcgctgtaaaaaaatccaaaataa 9170913  T
Q  688 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 787  Q
    | ||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||| | |||||    
T  9170912 ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac 9170813  T
Q  788 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaaca 887  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    |||||||||| |||| |||||| ||||||||||     
T  9170812 agaagttccttcattggtgtacgaatttgttagcaacggtacacttttcgatttcatacaaagcactaaagataaaacaaataatccaacatggaaaacc 9170713  T
Q  888 cgtttaaggatagcagcagagacagctggtgcttt 922  Q
    || |||||||||||||||||||||||||| |||||    
T  9170712 cgcttaaggatagcagcagagacagctggagcttt 9170678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 488 - 922
Target Start/End: Original strand, 9118166 - 9118600
Alignment:
Q  488 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 587  Q
    ||||||||  |||||||||||| |||| |  |||||||||||||| || |||||||||||||||||||| ||| |||||||||| ||||| ||||| | |    
T  9118166 tggtggtttcattttgctacaaaaactctttacaagagaagacacgtctcaatcagctcagatattcacagaaaaggaacttaaaaaagctaccaacagc 9118265  T
Q  588 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 687  Q
    |||||||||||||||||||| || ||||||||||| |||||| ||||||||||| |||| |||||||||| ||| || ||||| |||||||||| |||||    
T  9118266 tacgacgaaagcttaatcattggaagaggaggtttcggtacaattttcaaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataa 9118365  T
Q  688 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 787  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  9118366 tagacgcaaatcaaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcataggaatgttgtcaaacttttagggtgttgtttagagac 9118465  T
Q  788 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaaca 887  Q
    |||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||||||||||||  |||  |||||  ||| ||||||  |||| |||||    
T  9118466 agaagttccttccttggtctatgaattcgttagccacggtacacttttcgatttcatacaaaatactaagaataaaataaataatccaagatgggaaaca 9118565  T
Q  888 cgtttaaggatagcagcagagacagctggtgcttt 922  Q
    ||| ||||||||||||||||||||||||| |||||    
T  9118566 cgtctaaggatagcagcagagacagctggagcttt 9118600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 488 - 922
Target Start/End: Complemental strand, 9156374 - 9155940
Alignment:
Q  488 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 587  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  9156374 tggtggttccattttgctacaacaactatctacaagagaagacacctcgcaatcagctgaaatattcactgaagaggaacttaagaaagccaccaaaaac 9156275  T
Q  588 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 687  Q
    ||||| |||| ||||||||| || |||||||||||||||||||||||||||||| |||| ||||| |||||||| || ||||| ||||| || |||||||    
T  9156274 tacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgtaaaaaaatcaaaaataa 9156175  T
Q  688 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 787  Q
    |||| |||||||| |||||||| || ||||| ||||||||||| || |||||||||||||| || || ||||||||||| || || |||||||| |||||    
T  9156174 tagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagac 9156075  T
Q  788 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagataaagcaaacaatccagcatggaaaaca 887  Q
    |||||||||||| ||||| |||||||| |||||||| || |||||||| ||||||||||| | |  |||||||||| ||||||||||| ||||||||||     
T  9156074 agaagttccttccttggtttatgaattcgttagcaatggtacactttttgatttcatacatagtactaaagataaaacaaacaatccaacatggaaaacc 9155975  T
Q  888 cgtttaaggatagcagcagagacagctggtgcttt 922  Q
    ||||||| |||||||||||||||||| || |||||    
T  9155974 cgtttaaagatagcagcagagacagccggagcttt 9155940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 488 - 646
Target Start/End: Complemental strand, 9179094 - 9178936
Alignment:
Q  488 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 587  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9179094 tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac 9178995  T
Q  588 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaatttt 646  Q
    ||||| |||||||||||||| || |||||||||||||||||||||| ||||||| ||||    
T  9178994 tacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggagtttt 9178936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 9162699 - 9162578
Alignment:
Q  18 gatggatcatacgaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattg 117  Q
    ||||||| ||| |||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9162699 gatggattatatgaatgtttctgtcctgatggacaatctggaaatggaacacttgaaggaggttgtcatagacgagatattgttatcaaggttgccattg 9162600  T
Q  118 gtaagtcactaagcatagccca 139  Q
    ||| |||||||| |||||||||    
T  9162599 gtatgtcactaaacatagccca 9162578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 558 - 904
Target Start/End: Complemental strand, 9230010 - 9229664
Alignment:
Q  558 gaagaggaacttaagaaagccaccaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataaca 657  Q
    ||||| |||||||||||||| ||||| ||||| || || || ||||| || || ||||||||||| ||||| |||| |||||||||| |  | || ||||    
T  9230010 gaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaaca 9229911  T
Q  658 aaattgtcgctgttaaaaagtccaaaataatagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgt 757  Q
      ||||| ||  | || |||||||||||||| || || |  ||  | ||||||||||| || ||||| |||||| ||||||||||||||||||| || ||    
T  9229910 ggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgt 9229811  T
Q  758 tgtcaaacttttagggtgttgtttggagacagaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaa 857  Q
    ||||||||| || || ||||||||||||||| ||||||||| | | || ||||||||| ||||||| || || ||||||||||| || || | | |||      
T  9229810 tgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatttattagcaatggtacccttttcgatttgatgcacactagtatt 9229711  T
Q  858 gataaagcaaacaatccagcatggaaaacacgtttaaggatagcagc 904  Q
    || || | ||| ||| ||  ||||||||| |||||||||||||||||    
T  9229710 gaaaaggaaaataatgcaatatggaaaacgcgtttaaggatagcagc 9229664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 579 - 819
Target Start/End: Original strand, 1868269 - 1868509
Alignment:
Q  579 accaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagt 678  Q
    |||||||||| |||||| |  |||||||| || | ||| ||||||||||| |||||||||||| || |    ||||| | ||| || ||| | ||||| |    
T  1868269 accaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaat 1868368  T
Q  679 ccaaaataatagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttg 778  Q
    | |||||||||||   ||  || ||||| ||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| || ||||||||    
T  1868369 caaaaataatagatagaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttg 1868468  T
Q  779 tttggagacagaagttccttcattggtgtatgaatttgtta 819  Q
    ||| ||||||||||||||||  ||||| |||||||||||||    
T  1868469 tttagagacagaagttcctttgttggtttatgaatttgtta 1868509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 597 - 823
Target Start/End: Complemental strand, 1816352 - 1816126
Alignment:
Q  597 agcttaatcatcggtagaggaggttttggtacagttttcaaagga-attttgcccgataacaaaattgtcgctgttaaaaagtccaaaataatagacgca 695  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |  |||   ||||| | |||||| ||| | ||||||||||||| |||||||| |    
T  1816352 agcttaatcataggtagaggaggttttggtacagttttcaaaggggaacttgat-gataatagaattgtggctatcaaaaagtccaaaacaatagacgaa 1816254  T
Q  696 aatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttc 795  Q
    |  || || || ||||||||||||||||| | |||| | || ||||||||||| ||||| || |||||||| || ||||||||| | || ||||||||||    
T  1816253 agccaaattgaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgttgtctagaaacagaagttc 1816154  T
Q  796 cttcattggtgtatgaatttgttagcaa 823  Q
    |||  ||||| ||||| |||||||||||    
T  1816153 ctttgttggtttatgagtttgttagcaa 1816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 9156876 - 9156784
Alignment:
Q  30 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag 122  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |  | |||||||||||||||||||||    
T  9156876 gaatgtttctgtcctgatggacactctggaaatggaacattggaaggagggtgtcatagacgagaggtcatcaccaaggttgccattggtaag 9156784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 9171484 - 9171392
Alignment:
Q  30 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag 122  Q
    |||||||| |||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  9171484 gaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag 9171392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 9179466 - 9179374
Alignment:
Q  30 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag 122  Q
    |||||||| |||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  9179466 gaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag 9179374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 708 - 819
Target Start/End: Original strand, 1842789 - 1842900
Alignment:
Q  708 caattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttccttcattggtgt 807  Q
    ||||||||||| |||||| || |||| || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||  ||||| |    
T  1842789 caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggttt 1842888  T
Q  808 atgaatttgtta 819  Q
    ||||||||||||    
T  1842889 atgaatttgtta 1842900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 9201174 - 9201067
Alignment:
Q  30 gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaa 129  Q
    ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| || |||| || ||||||||||||| |||||||||   ||||    
T  9201174 gaatgtttttgtcctgatggacaatctggaaatggaacgttggcaggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaa 9201075  T
Q  130 gcatagcc 137  Q
    ||||||||    
T  9201074 gcatagcc 9201067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 597 - 823
Target Start/End: Original strand, 1856692 - 1856918
Alignment:
Q  597 agcttaatcatcggtagaggaggttttggtacagttttcaaagga-attttgcccgataacaaaattgtcgctgttaaaaagtccaaaataatagacgca 695  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||  |  |||   ||||| | |||||| ||| | |||||||| |||| |||||||  |    
T  1856692 agcttaatcataggtaaaggaggttttggtacagtttacaaaggggaacttgat-gataatagaattgttgctatcaaaaagtctaaaacaatagacaaa 1856790  T
Q  696 aatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttc 795  Q
    |  || || || ||||||||||| ||||| | |||| | || ||||||||||| || || || |||||||| |||||||||||| | || ||||||||||    
T  1856791 agccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaaacagaagttc 1856890  T
Q  796 cttcattggtgtatgaatttgttagcaa 823  Q
    |||  ||||| ||||| |||||||||||    
T  1856891 ctttgttggtttatgagtttgttagcaa 1856918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 315 - 440
Target Start/End: Complemental strand, 9162459 - 9162334
Alignment:
Q  315 catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg 414  Q
    |||||||||||| ||||||| |||||| ||||||| || || |  || ||| ||| || |||||||||| ||||||||||| | ||  | ||||||||||    
T  9162459 catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg 9162360  T
Q  415 cggtttcatctctatacttgacgtac 440  Q
    || |||||  ||||||||||||||||    
T  9162359 cgatttcagttctatacttgacgtac 9162334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 9118043 - 9118113
Alignment:
Q  365 acacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctctatacttga 435  Q
    ||||| || |||||||||||||||||||||| |  |  | |||||||||| | ||||||||||||||||||    
T  9118043 acacatttcaaatgcaggatcaagtgctggaatcgttattctatttgtggggatttcatctctatacttga 9118113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 640
Target Start/End: Original strand, 37567636 - 37567677
Alignment:
Q  599 cttaatcatcggtagaggaggttttggtacagttttcaaagg 640  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  37567636 cttaaccataggtagaggaggttttggtacagttttcaaagg 37567677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University