View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_low_10 (Length: 447)

Name: NF12637_low_10
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_low_10
NF12637_low_10
[»] chr3 (3 HSPs)
chr3 (43-432)||(53718684-53719075)
chr3 (43-97)||(46901096-46901152)
chr3 (35-90)||(45521780-45521837)
[»] chr7 (2 HSPs)
chr7 (35-96)||(45671207-45671270)
chr7 (43-92)||(45671500-45671551)
[»] chr2 (1 HSPs)
chr2 (35-90)||(19831507-19831564)
[»] chr4 (2 HSPs)
chr4 (60-97)||(55072683-55072720)
chr4 (69-97)||(11285815-11285843)
[»] chr1 (1 HSPs)
chr1 (69-97)||(34808189-34808217)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 43 - 432
Target Start/End: Complemental strand, 53719075 - 53718684
Alignment:
Q  43 taaaactaaaacgatacatttgcatagactaaaaccatattttaacctataaaaa-tgagatgataatggggtatagtagcatcgactttgctctcgatg 141  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  53719075 taaaactaaaacgatacatttgtataaactaaaatcatattttagcctataaaaaatgagatgatgatgaggtatagtagcatcgactttgctctcgatg 53718976  T
Q  142 agagtggt-atatggtgaagacttcttcattaagaagttttaaaggcaatgctagttgaggacggtgtgttatttccactctaattagtggatcaacatt 240  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53718975 agagtagttatatggtgaagacttcttaattaagaagttttaaaggcaatgctagttgaggacgttgtgttatttccactctaattagtggatcaacatt 53718876  T
Q  241 tgactatgtccatcataca-nnnnnnnnnaagaatatgtccatcatacttgaatatcattggatggacttttgtccagtttagaacaatattacacaatc 339  Q
    |||||||||||||||||||          ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  53718875 tgactatgtccatcatacattttatttttaagaatatgtccatcatacttgaatatcattggatggccttttgtccactttagaacaatattacacaatc 53718776  T
Q  340 aatatggtgtagagtattagtttcaaattaattttcaatttctagtnnnnnnntcaaagttcaaatgaccaaaatagttaatgtagtgtcttt 432  Q
     |||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  53718775 -atatggtgtagattattagtttcaaattaattttcaatttctagtaaaaaaatcaaagttcaaatgaccaaaatagttaatgtagtgtcttt 53718684  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 46901152 - 46901096
Alignment:
Q  43 taaaactaaaacgatacat--ttgcatagactaaaaccatattttaacctataaaaa 97  Q
    |||||| ||||||||||||  ||||| ||||||||||||||||||| ||||||||||    
T  46901152 taaaaccaaaacgatacatatttgcagagactaaaaccatattttagcctataaaaa 46901096  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 45521780 - 45521837
Alignment:
Q  35 acaggaattaaaactaaaacgatacat--ttgcatagactaaaaccatattttaacct 90  Q
    ||||||| |||||| ||||||| ||||  ||||| |||||||||||||||||||||||    
T  45521780 acaggaactaaaaccaaaacgaaacatatttgcaaagactaaaaccatattttaacct 45521837  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 45671270 - 45671207
Alignment:
Q  35 acaggaattaaaactaaaacgatacat--ttgcatagactaaaaccatattttaacctataaaa 96  Q
    ||||||| |||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  45671270 acaggaactaaaactaaaacgagacatatttgcatggactaaaaccatattttaacctataaaa 45671207  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 45671500 - 45671551
Alignment:
Q  43 taaaactaaaacgatacat--ttgcatagactaaaaccatattttaacctat 92  Q
    |||||||||||||| ||||  |||||  ||||||||||||||||||||||||    
T  45671500 taaaactaaaacgagacatatttgcaatgactaaaaccatattttaacctat 45671551  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 19831564 - 19831507
Alignment:
Q  35 acaggaattaaaactaaaacgatacat--ttgcatagactaaaaccatattttaacct 90  Q
    ||||||| |||||| ||||||| ||||  ||||| |||||||||||||||||||||||    
T  19831564 acaggaactaaaaccaaaacgaaacatatttgcaaagactaaaaccatattttaacct 19831507  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 55072683 - 55072720
Alignment:
Q  60 atttgcatagactaaaaccatattttaacctataaaaa 97  Q
    |||||||  |||||||||||||||||||||||||||||    
T  55072683 atttgcagggactaaaaccatattttaacctataaaaa 55072720  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 11285815 - 11285843
Alignment:
Q  69 gactaaaaccatattttaacctataaaaa 97  Q
    |||||||||||||||||||||||||||||    
T  11285815 gactaaaaccatattttaacctataaaaa 11285843  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 34808217 - 34808189
Alignment:
Q  69 gactaaaaccatattttaacctataaaaa 97  Q
    |||||||||||||||||||||||||||||    
T  34808217 gactaaaaccatattttaacctataaaaa 34808189  T

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