View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_11 (Length: 424)
Name: NF12637_low_11
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 33900255 - 33900669
Alignment:
| Q |
10 |
agcaaaggggaacacataagcaaaattgaacttaaaattgatggcataaaaaatgaacaatcaatgtatatcattgaacaatctcttaggacacttcaag |
109 |
Q |
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| T |
33900255 |
agcaaaggggaacacataagcaaaattgaacttaaaattgatggcataaaaaatgaacaatcaatgtatatcattgaacaatctcttaggacacttcaag |
33900354 |
T |
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| Q |
110 |
gtgttgaaaccatagaaacatatttagacattaataaaattgtcttaacttataaaccttatatgactggtccaagaactttcattgaactcattgaatc |
209 |
Q |
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| T |
33900355 |
gtgttgaaaccatagaaacatatttagacattaataaaattgtcttaacttataaaccttatatgactggtccaagaactttcattgaactcattgaatc |
33900454 |
T |
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| Q |
210 |
ttcaggatcagggtgttttagagccacaatatttccaaatgatggtggaagaaaagcacataaacaagaggaaattaatagatactttaaattattaatt |
309 |
Q |
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| T |
33900455 |
ttcaggatcagggtgttttagagccacaatatttccaaatgatggtggaagaaaagcacataaacaagaggaaattaatagatactttaaattattaatt |
33900554 |
T |
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| Q |
310 |
tggagtttggtttttactgttcctgnnnnnnnaacatctatggttcttatgtatatacctggagttaaagatgttttagaggtcaaaattgtcaatatgt |
409 |
Q |
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| T |
33900555 |
tggagtttggtttttactgttcctgtttttttaacatctatggttcttatgtatatacctggagttaaaaatgttttagaggtcaaaattgtcaatatgt |
33900654 |
T |
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| Q |
410 |
tgaatattggattgc |
424 |
Q |
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| T |
33900655 |
tgaatattggattgc |
33900669 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 42516318 - 42516197
Alignment:
| Q |
139 |
attaataaaattgtcttaacttataaaccttatatgactggtccaagaactttcattgaactcattgaatcttcaggatcagggtgttttagagccacaa |
238 |
Q |
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| T |
42516318 |
attaaaaaaattgtcttaatttataaaccatatataactggaccaaaaaccttcattgatgtaattgagtctaaagtatcaggttgttttagagccatga |
42516219 |
T |
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| Q |
239 |
tatttccaaatgatggtggaag |
260 |
Q |
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| T |
42516218 |
tatttctaaatgactgtggaag |
42516197 |
T |
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