View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12637_low_12 (Length: 400)
Name: NF12637_low_12
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_12 |
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| [»] scaffold1122 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 55 - 386
Target Start/End: Complemental strand, 45639410 - 45639090
Alignment:
| Q |
55 |
tgatgaaaaaggtgtttacaatagctatatatacaaaactgaagttgcatagtaagtaaatctatgctagcaactagtgaactaaggtggcttgttctgc |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||||||||| |
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| T |
45639410 |
tgatgaaaaaggtgtttacaatagctatatatacaaaactgaaggtgcatagtaagt---------ctagcaactagagaactaaggtggtttgttctgc |
45639320 |
T |
|
| Q |
155 |
aagttatcttgttcatttgctttctttcctttttcctctatatactatgatag----tgagaaaattgatgccctgattgtataacttgttcgagcatcc |
250 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
45639319 |
aagttatcttgttcctttgctttctttcctttttcctctatatactctgatagagagtgagaaagttgatgccctgattgcataacttgttcgagcatcc |
45639220 |
T |
|
| Q |
251 |
ttcacagtcaaattcgtgtcaacggacttctgaatagcaaaattcatgagtgattgtcatacatccacatatcatcaggtctgttggtcatgttccataa |
350 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
45639219 |
ttcacggtcaaattcatgtcaacggacttctgaatagcaaaattcatgagtgattgtcatacatccacctatcatcaggtctattggtcatgttccataa |
45639120 |
T |
|
| Q |
351 |
catttttattttcctcataaaggcttcattcatttg |
386 |
Q |
| |
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|| |||||||||||||||||||||||||||| |
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| T |
45639119 |
ca------ttttcctcataaaggcttcattcatttg |
45639090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 12823432 - 12823258
Alignment:
| Q |
27 |
tattagaaaaacagagaaatgattcttat-gatgaaaaaggtgtttacaatagctatatatacaaaactgaagttgcatagtaagtaaatctatgctagc |
125 |
Q |
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|||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12823432 |
tattaggaaaacagagaaatgattcttattgatgaaaaaagtgtttacaattgctatatatacaaaactgaaggtgcatagtaagtaaatctatgctagc |
12823333 |
T |
|
| Q |
126 |
aactagtgaactaaggtggcttgttctgcaagttatcttgttcatttgctttctttcctttttcctctatatact |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
12823332 |
aactagagaactaaggtggcttgttctgcaagttatcttgttcctttgctttctttccttcttcctctatatact |
12823258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 16020014 - 16020195
Alignment:
| Q |
27 |
tattagaaaaacagagaaatgattcttatgatgaaa-aaggtgtttacaatagctatatatacaaaact-gaagttgcatagtaagtaaatctatgctag |
124 |
Q |
| |
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||||||||||||||||||||||||||| | | ||| || | ||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||| |
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|
| T |
16020014 |
tattagaaaaacagagaaatgattcttcttaataaagaaagggtttacaattgctatatatacaaaatttgaaggtgcatagtaagtaaatctatgctag |
16020113 |
T |
|
| Q |
125 |
caactagtgaactaaggtggcttgttctgcaagttatcttgttcatttgctttctttcctttttcctctatatactatgata |
206 |
Q |
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||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||| |||||||| ||||| |
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| T |
16020114 |
caactagagaactaaggtggcttgttctacaagttatcttattcctttgctttctttccttcttcctttatatactctgata |
16020195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1122 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold1122
Description:
Target: scaffold1122; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 630 - 804
Alignment:
| Q |
27 |
tattagaaaaacagagaaatgattcttat-gatgaaaaaggtgtttacaatagctatatatacaaaactgaagttgcatagtaagtaaatctatgctagc |
125 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
630 |
tattaggaaaacagagaaatgattcttattgatgaaaaaagtgtttacaattgctatatatacaaaactgaaggtgcatagtaagtaaatctatgctagc |
729 |
T |
|
| Q |
126 |
aactagtgaactaaggtggcttgttctgcaagttatcttgttcatttgctttctttcctttttcctctatatact |
200 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
730 |
aactagagaattaaggtggcttgttctgcaagttatcttgttcctttgctttctttccttcttcctctatatact |
804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 35089860 - 35089688
Alignment:
| Q |
25 |
agtattagaaaaacagagaaatgattcttatgatgaaaaaggtgtttacaatagctatatatacaaaactgaagttgcatagtaagtaaatctatgctag |
124 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
35089860 |
agtattggaaaaacagagaaatgattcttattattaaaaaggtgttaacaatagctatatatacaaaactgaaggtgcatagcaagtaaatctatgctag |
35089761 |
T |
|
| Q |
125 |
caactagtgaactaaggtggcttgttctgcaagttatcttgttcatttgctttctttcctttttcctctatatactatgata |
206 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||| ||||| |
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|
| T |
35089760 |
caactagagaactaaggtggctt---------gttatcttattcctttgctttctttccttcttcctctatatactctgata |
35089688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 35085114 - 35084937
Alignment:
| Q |
27 |
tattagaaaaacagagaaatgattcttatgatgaaaaaggtgtttacaatagctatatatacaaaactgaagttgcatagtaagtaaatctatgctagca |
126 |
Q |
| |
|
|||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |
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|
| T |
35085114 |
tattggaaaaacagagaaatgattcttattattaaaaaggtgttaacaatagctatatatacaaaactgaaggtgcatagcaattaaatctatgctagca |
35085015 |
T |
|
| Q |
127 |
actagtgaactaaggtggcttgttctgcaagttatcttgttcatttgctttctttcctttttcctctatatactatgatagtgagaa |
213 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||| ||||||| |||| |
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|
| T |
35085014 |
actagagaactaaggtggctt---------gttatcttattcctttgctttctttccttcttcctctatatactctgatagttagaa |
35084937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 16367225 - 16367347
Alignment:
| Q |
84 |
tatacaaaactgaagttgcatagtaagtaaatctatgctagcaactagtgaactaaggtggcttgttctgcaagttatcttgttcatttgctttctttcc |
183 |
Q |
| |
|
||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |
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|
| T |
16367225 |
tatacaagaatgaaggtgcataataagtaaatctatactagcaactagtgaactaaggtggcttgttctacaagttatcctgttcctttgctttctttcc |
16367324 |
T |
|
| Q |
184 |
tttttcctctatatactatgata |
206 |
Q |
| |
|
|| |||||||||||||| ||||| |
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|
| T |
16367325 |
ttcttcctctatatactctgata |
16367347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 27033897 - 27034020
Alignment:
| Q |
84 |
tatacaaaactgaagttgcatagtaagtaaatctatgctagcaactagtgaactaaggtggcttgttctgcaagttatcttg-ttcatttgctttctttc |
182 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||| | ||||| | |||| || |
|
|
| T |
27033897 |
tatacaagaatgaaggtgcatagtaagtaaacctacaccagctactagagaactaaggtggcttgttctgcaagttatcttgatccattttccttctatc |
27033996 |
T |
|
| Q |
183 |
ctttttcctctatatactatgata |
206 |
Q |
| |
|
||| || ||||||||||| ||||| |
|
|
| T |
27033997 |
cttctttctctatatactctgata |
27034020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 27038680 - 27038836
Alignment:
| Q |
27 |
tattagaaaaacagagaaatgattcttatgatgaaaaag-gtgtttacaatagctatatatacaaaactgaagttgcatagtaagtaaatctatgctagc |
125 |
Q |
| |
|
|||||| |||| ||||||||||||||||| | |||||| | || ||||| ||| ||||||| | ||||| ||||||||||||||| ||| ||||| |
|
|
| T |
27038680 |
tattaggaaaatagagaaatgattcttattaataaaaagagagtctacaaatcatatttatacaagaatgaaggtgcatagtaagtaaaactacactagc |
27038779 |
T |
|
| Q |
126 |
aactagtgaactaaggtggcttgttctgcaagttatcttgttcatttgctttctttc |
182 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| || ||| | ||||||| |
|
|
| T |
27038780 |
tactagagaattaaggtggcttgttctgcaagttatcttgatccttttccttctttc |
27038836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 50335198 - 50335300
Alignment:
| Q |
26 |
gtattagaaaaacagagaaatgattcttat-gatgaaaaaggtgtttacaatagctatatatacaaaactgaagttgcatagtaagtaaatctatgctag |
124 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||| |||| |
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|
| T |
50335198 |
gtattaggaaaatagagaaatgattcttattgatgaaaagagtgtttacaattcatatatatacaagaatgaaggtgcatagtaagtaaaactatactag |
50335297 |
T |
|
| Q |
125 |
caa |
127 |
Q |
| |
|
||| |
|
|
| T |
50335298 |
caa |
50335300 |
T |
|
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