View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_16 (Length: 361)
Name: NF12637_low_16
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 39789017 - 39789358
Alignment:
| Q |
5 |
acaaaagtggatatgggtattgcctttaatgtctaatccacccatttgtttagcacaaattagaagttattgtctttaaagcatgttaataagagtgtga |
104 |
Q |
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| T |
39789017 |
acaaaagtggatatgggtattgcctttaatgtctaatccacccatttgtttagcacaaattagaagttattgtctttaaagcatgttaataagagtgtga |
39789116 |
T |
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| Q |
105 |
ctttgtggttttctaagttggaattactatgatctaagtccaataaagctggaagataaatacaagacatggaactcaatagactataaatagtcacgaa |
204 |
Q |
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| T |
39789117 |
ctttgtggttttctaagttggaattactatgatctaagtccaataaagctggaagatgaatacaagacatggaactcaatagactataaatagtcacgaa |
39789216 |
T |
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| Q |
205 |
tttcattttctaataaaaaatagtcaaatttactaggcctagcctagctactagctttggtaagttaggcatataatgcaagtatttcccctggaagata |
304 |
Q |
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| T |
39789217 |
tttcattttctaataaaaaatagtcaaatttactaggcctagcctagctactagctttggtaagttaggcatataatgcaagtatttcccctggaagata |
39789316 |
T |
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| Q |
305 |
atgttattgtttcgattgattaataagttgtacgttaaaatt |
346 |
Q |
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| T |
39789317 |
atgttattgtttcgattgattaataagttgtacgttaaaatt |
39789358 |
T |
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