View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_low_2 (Length: 825)

Name: NF12637_low_2
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_low_2
NF12637_low_2
[»] chr7 (2 HSPs)
chr7 (18-810)||(24722473-24723284)
chr7 (532-583)||(12820308-12820359)
[»] chr2 (12 HSPs)
chr2 (494-576)||(7174740-7174822)
chr2 (457-546)||(11329753-11329842)
chr2 (605-772)||(11329877-11330035)
chr2 (738-782)||(7160903-7160947)
chr2 (622-656)||(11237414-11237448)
chr2 (739-779)||(11237549-11237589)
chr2 (91-185)||(7175107-7175202)
chr2 (739-798)||(7200108-7200167)
chr2 (739-774)||(33020181-33020216)
chr2 (611-657)||(7174662-7174708)
chr2 (531-573)||(7200364-7200406)
chr2 (740-801)||(7174500-7174561)
[»] chr3 (11 HSPs)
chr3 (447-502)||(7398617-7398672)
chr3 (738-776)||(2456105-2456143)
chr3 (448-502)||(2462818-2462872)
chr3 (451-497)||(23231419-23231465)
chr3 (739-779)||(763707-763747)
chr3 (739-779)||(9585281-9585321)
chr3 (739-779)||(43991828-43991868)
chr3 (738-793)||(2441885-2441940)
chr3 (452-481)||(759124-759153)
chr3 (701-774)||(2491909-2491982)
chr3 (450-491)||(9608805-9608846)
[»] chr6 (2 HSPs)
chr6 (739-779)||(4183150-4183190)
chr6 (739-777)||(4743996-4744034)


Alignment Details
Target: chr7 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 18 - 810
Target Start/End: Original strand, 24722473 - 24723284
Alignment:
Q  18 cgcaaatggcaccgagaacaactgccacaaagaggcgtcgtcgtttgagctcctccatcggaaatccaccacttcccactcttccattcgatcttgtgtt 117  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24722473 cgcaaatggcaccgggaacaacagccacaaagaggcgtcgtcgtttgagctcctccatcggaaatccaccacttcccactcttccattcgatcttgtgtt 24722572  T
Q  118 agaaattctctataggcttaag-tcaagtccctcacgcaattcaaatgtgtctgcaagtcctggaaatcattcatttcccatcctaaattcgccaaaaag 216  Q
    |||||||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24722573 agaaattctctataggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatcattcatctcccatcctaaattcgccaaaaag 24722672  T
Q  217 cacttttgtgtttcagccaagacccaccatctcttcttccattgtaaacccaaaggctcgttcgagtacatcatcaagacttgccctctctcgactattt 316  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  24722673 cacttttgtgtttcaaccaagacccaccatctcttcttccattgtaaacccaaaggctcgttcgagtacatcatcaaggctttccctctctcgactattt 24722772  T
Q  317 tcacaaa------gacccccacggccaccaccacgcaacagttagattatcctctgagcaatccaaactgtttaaactacgatcgcttccgtggctcttg 410  Q
    |||||||      ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  24722773 tcacaaaaaaagtgacccccactgccaccaccacgcaacagttagattatcctctgagcaatccaaactgtttaaactgcgatcgcatccgtggctcttg 24722872  T
Q  411 ccacggcatactttgtattgtactctataccggttacgttattttgtggaacccttccattagaaaatccacaaaattgccctctttggaaattctatgg 510  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24722873 ccacggcatactttgtatcgtactctataccggttacgttattttgtggaacccttccattagaaaattcacaaaattgccctctttggaaattctatgg 24722972  T
Q  511 aataacgcaatatatagcggctttggc----tatgatcattctact-----------gatacttacaaggtggttgccttttcttccacatactataatg 595  Q
    ||||||||||   ||||||||||||||    |||||||||||||||           |||||||||||||||||||||||||||||||||||| ||||||    
T  24722973 aataacgcaa---atagcggctttggctatatatgatcattctactgatacttacaagatacttacaaggtggttgccttttcttccacataccataatg 24723069  T
Q  596 gggtttctgaagtccaaacttatgtgcatactttgggtaccaatttttggagaaggattcagaattgtcctcgcaatctttataaagaatcaggaaaatt 695  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24723070 gggtttctgatgtccaaactcatgtgcatacttcgggtaccaatttttggagaaggattcagaattgtcctcgcaatctttataaagaatcaggaaaatt 24723169  T
Q  696 tgtgggtggaactcttaattggttaccatatgatcatttgagtattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgattat 795  Q
    ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24723170 tgtcggtggaactctttatttgttaccatatgatcatttgagtattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgattat 24723269  T
Q  796 ggatcgacgtctgtg 810  Q
     ||||||||| ||||    
T  24723270 agatcgacgtatgtg 24723284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 583
Target Start/End: Complemental strand, 12820359 - 12820308
Alignment:
Q  532 tttggctatgatcattctactgatacttacaaggtggttgccttttcttcca 583  Q
    ||||| |||||| |||| ||||| |||||||||||||| |||||||||||||    
T  12820359 tttggttatgataattcaactgacacttacaaggtggtggccttttcttcca 12820308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 494 - 576
Target Start/End: Complemental strand, 7174822 - 7174740
Alignment:
Q  494 ctttggaaattctatggaataacgcaatatatagcggctttggctatgatcattctactgatacttacaaggtggttgccttt 576  Q
    |||||||||| | ||||| |||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||| |||||||    
T  7174822 ctttggaaatcccatggagtaacacaatatatagctgctttggctatgatcattccactgattcttacaaggtggctgccttt 7174740  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 457 - 546
Target Start/End: Original strand, 11329753 - 11329842
Alignment:
Q  457 tggaacccttccattagaaaatccacaaaattgccctctttggaaattctatggaataacgcaatatatagcggctttggctatgatcat 546  Q
    ||||||||||| ||||  |||| | ||||||| |||||||| ||||||| | ||| |||| |||||||||||||||||||||||||||||    
T  11329753 tggaacccttctattatgaaattcgcaaaatttccctctttagaaattcaagggagtaacacaatatatagcggctttggctatgatcat 11329842  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 605 - 772
Target Start/End: Original strand, 11329877 - 11330035
Alignment:
Q  605 aagtccaaacttatgtgcatactttgggtaccaatttttggagaaggattcagaattgtcctcgcaatctttataaagaatcaggaaaatttgtgggtgg 704  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||||||||| ||| |||||         |  | ||||||||||||||  |   |||    
T  11329877 aagtccaaacttatgttcatactatgggtaccaatttttggacaaggattcaggattttcctc---------agcatgaatcaggaaaattcattaatgg 11329967  T
Q  705 aactcttaattggttaccatatgatcatttgagtattgtttctcttgatttggagaaggagtcttatc 772  Q
    |||||||||||||||  ||| | || |||  | ||||||||| |||||||||||||||| ||||||||    
T  11329968 aactcttaattggttggcatgtaataattcaactattgtttcacttgatttggagaaggggtcttatc 11330035  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 738 - 782
Target Start/End: Complemental strand, 7160947 - 7160903
Alignment:
Q  738 tattgtttctcttgatttggagaaggagtcttatcaagagctatt 782  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  7160947 tattgtttctcttgatttggagaaggagtcttatcgagagctatt 7160903  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 656
Target Start/End: Original strand, 11237414 - 11237448
Alignment:
Q  622 catactttgggtaccaatttttggagaaggattca 656  Q
    |||||||||||||||||||||||||||||||||||    
T  11237414 catactttgggtaccaatttttggagaaggattca 11237448  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 779
Target Start/End: Original strand, 11237549 - 11237589
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaagagct 779  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  11237549 attgtttctcttgatttggagaaggaaacttatcaagagct 11237589  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 7175202 - 7175107
Alignment:
Q  91 tcccactcttccattcgatcttgtgttagaaattctctataggctt-aagtcaagtccctcacgcaattcaaatgtgtctgcaagtcctggaaatc 185  Q
    ||||||||||||||||||||||||   ||| |||||||| ||||||  |||||| |||||| | || || |||| ||||| ||| |||||||||||    
T  7175202 tcccactcttccattcgatcttgttgaagacattctctacaggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatc 7175107  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 798
Target Start/End: Complemental strand, 7200167 - 7200108
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgattatgga 798  Q
    ||||||||||||||||||||||| |||||||||| || ||| ||  ||||||||| ||||    
T  7200167 attgtttctcttgatttggagaatgagtcttatcgagcgctgttgtttcctgattttgga 7200108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 774
Target Start/End: Original strand, 33020181 - 33020216
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaa 774  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33020181 attgtttctcttgatttggagaaggagtcgtatcaa 33020216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 657
Target Start/End: Complemental strand, 7174708 - 7174662
Alignment:
Q  611 aaacttatgtgcatactttgggtaccaatttttggagaaggattcag 657  Q
    ||||||||||||||||| ||||||||| || |||||||| |||||||    
T  7174708 aaacttatgtgcatactatgggtaccacttcttggagaatgattcag 7174662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 7200406 - 7200364
Alignment:
Q  531 ctttggctatgatcattctactgatacttacaaggtggttgcc 573  Q
    ||||||||||||||| ||  |||||||||||||||||||||||    
T  7200406 ctttggctatgatcactcctctgatacttacaaggtggttgcc 7200364  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 801
Target Start/End: Complemental strand, 7174561 - 7174500
Alignment:
Q  740 ttgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgattatggatcg 801  Q
    ||||||||||| |||||||||| |||||||||  |||| |||| |  |||||||||||||||    
T  7174561 ttgtttctcttcatttggagaatgagtcttatggagagatattgcagcctgattatggatcg 7174500  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 7398672 - 7398617
Alignment:
Q  447 cgttattttgtggaacccttccattagaaaatccacaaaattgccctctttggaaa 502  Q
    |||| ||||||||||||||||||||||||| | ||||||||| || ||||||||||    
T  7398672 cgttgttttgtggaacccttccattagaaacttcacaaaattaccttctttggaaa 7398617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 738 - 776
Target Start/End: Original strand, 2456105 - 2456143
Alignment:
Q  738 tattgtttctcttgatttggagaaggagtcttatcaaga 776  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  2456105 tattgtttctcttgatttggagaaggagtcatatcaaga 2456143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 2462818 - 2462872
Alignment:
Q  448 gttattttgtggaacccttccattagaaaatccacaaaattgccctctttggaaa 502  Q
    ||||||||||||||||||||||||||||||| | ||||||| || | ||||||||    
T  2462818 gttattttgtggaacccttccattagaaaattcgcaaaattaccttatttggaaa 2462872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 23231465 - 23231419
Alignment:
Q  451 attttgtggaacccttccattagaaaatccacaaaattgccctcttt 497  Q
    ||||||||||||||||||||||||||||||| || |||||| |||||    
T  23231465 attttgtggaacccttccattagaaaatccaaaatattgccttcttt 23231419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 779
Target Start/End: Complemental strand, 763747 - 763707
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaagagct 779  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  763747 attgtttctcttgatttggagaaggagtcgtatcaaaagct 763707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 779
Target Start/End: Complemental strand, 9585321 - 9585281
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaagagct 779  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  9585321 attgtttctcttgatttggagaaggagtcgtatcaaaagct 9585281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 779
Target Start/End: Original strand, 43991828 - 43991868
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaagagct 779  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  43991828 attgtttctcttgatttggagacggagtcttatcaaaagct 43991868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 793
Target Start/End: Original strand, 2441885 - 2441940
Alignment:
Q  738 tattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgatt 793  Q
    |||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||    
T  2441885 tattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgatt 2441940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 481
Target Start/End: Complemental strand, 759153 - 759124
Alignment:
Q  452 ttttgtggaacccttccattagaaaatcca 481  Q
    ||||||||||||||||||||||||||||||    
T  759153 ttttgtggaacccttccattagaaaatcca 759124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 774
Target Start/End: Original strand, 2491909 - 2491982
Alignment:
Q  701 gtggaactcttaattggttaccatatgatcatttgagtattgtttctcttgatttggagaaggagtcttatcaa 774  Q
    |||| ||| ||||||||||| ||| |||| |||   ||||| ||||||||||||| ||||||||||| ||||||    
T  2491909 gtggcactgttaattggttagcatgtgatgattcatgtattctttctcttgatttagagaaggagtcatatcaa 2491982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 9608846 - 9608805
Alignment:
Q  450 tattttgtggaacccttccattagaaaatccacaaaattgcc 491  Q
    ||||||||||||||||||||| |||||||  |||||||||||    
T  9608846 tattttgtggaacccttccatcagaaaattaacaaaattgcc 9608805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 779
Target Start/End: Complemental strand, 4183190 - 4183150
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaagagct 779  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  4183190 attgtttctcttcatttgcagaaggagtcttatcaagagct 4183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 739 - 777
Target Start/End: Complemental strand, 4744034 - 4743996
Alignment:
Q  739 attgtttctcttgatttggagaaggagtcttatcaagag 777  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  4744034 attgtttctcttcatttgcagaaggagtcttatcaagag 4743996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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