View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_20 (Length: 329)
Name: NF12637_low_20
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 27887124 - 27887423
Alignment:
| Q |
16 |
cacttgaaaaaattgcaggtgtgttccttccttatttttaatagccaaacctttactgttatatattgaatttacannnnnnnnn-gttgaattgaattt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27887124 |
cacttgaaaaaattgcaggtgtgttccttccttatttttaatagccaaacctttactgttatatattgaatttacattttttttttgttgaattgaattt |
27887223 |
T |
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| Q |
115 |
acattatttcttgctaatattttgttccaagtttaatgtaagagacttacaaggaaattagttaccatcataatatcatataaatcttatgagttatctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27887224 |
acattatttcttgctaatattttgttccaagtttaatgtaagagacttacaaggaaattagttaccatcataatatcatataaatcttatgagttatctt |
27887323 |
T |
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| Q |
215 |
cttaccatccaagagagttcatgcactttttctcgaacatgacaattgggagacatacctaatattttagctattcgttttccatgaagtggtcaggttt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27887324 |
cttaccatccaagagagttcatgcactttttctcgaacatgacaattgggagacatacctaatattttagctattcgttttccatgaagtggttaggttt |
27887423 |
T |
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