View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_21 (Length: 319)
Name: NF12637_low_21
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_21 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 33900982 - 33900681
Alignment:
| Q |
18 |
gtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttccctttagccaacacttccaaatacttgccaagtagaataaaagaaataagca |
117 |
Q |
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| T |
33900982 |
gtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttccctttagccaacacttccaaatacttgccaagtagaataaaagaaataagca |
33900883 |
T |
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| Q |
118 |
tagaacttgtttcnnnnnnntcacttccttcgaaatgggaagaaaatgtagctcttccaacaacataaacagaatagaaataagctgcatttgttcctaa |
217 |
Q |
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| T |
33900882 |
tagaacttgtttcaaaaaaatcacttccttcgaaatgggaagaaaatgtagctcttccaacaacataaacagaatagaaataagctgcatttgttcctaa |
33900783 |
T |
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| Q |
218 |
tgctatcaacaaatccatgtttgcataacctttgctcaaagctttataggctccaacataaaatcttcttcctatgacaaactgtaccggtgtcgaaaac |
317 |
Q |
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| T |
33900782 |
tgctatcaacaaatccatgtttgcataacctttgctcaaagctttataggctccaacataaaatcttcttcctatgacaaactgtaccggtgtcgaaaac |
33900683 |
T |
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| Q |
318 |
tc |
319 |
Q |
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|| |
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| T |
33900682 |
tc |
33900681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 33918508 - 33918416
Alignment:
| Q |
18 |
gtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttccctttagccaacacttccaaatacttgccaagtagaataaaagaa |
110 |
Q |
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| T |
33918508 |
gtatcaggtgttaaatccatgagtttcgcaatagcttgtgatgttttccctttagccaacacttccaaatacttgccaaatagaataaaagaa |
33918416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 2781968 - 2782021
Alignment:
| Q |
182 |
ataaacagaatagaaataagctgcatttgttcctaatgctatcaacaaatccat |
235 |
Q |
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| T |
2781968 |
ataaacagaatagaaataagctgcatttgttcccagtgctatcagcacatccat |
2782021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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