View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_24 (Length: 311)
Name: NF12637_low_24
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 52836150 - 52836438
Alignment:
| Q |
18 |
caaattgaatgggaacgacatgacaaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaaggaagtg |
117 |
Q |
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| T |
52836150 |
caaattgaacgggaacgacatgacaaggtatttagtgtgatgaggaagtccatcttttgtattttgtgttagtatggtgcca-tgtataaaaaggaagtg |
52836248 |
T |
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| Q |
118 |
tattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaa------acattgataga |
211 |
Q |
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| T |
52836249 |
tattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggttgacagggttatgaaacgtgacaaaaaagtcggaaaatgataga |
52836348 |
T |
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| Q |
212 |
ggctgctggcattgattatgagtgtccccagattgtgagcctttttgcctttcttttactgattagttgttttcattgtccatgtctctg |
301 |
Q |
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| T |
52836349 |
ggctgctggcattgattatgaatgtccccagattgtgagctttttagcctttcttttactgattagttgttttcattgtccatgtctctg |
52836438 |
T |
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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 48967798 - 48967517
Alignment:
| Q |
18 |
caaattgaatgggaacgacatgacaaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaaggaagtg |
117 |
Q |
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||||||||| | || | |||||||||||||| ||||||||||||||||| ||| ||||||||| || || | |||||| ||||||||||| || || |
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| T |
48967798 |
caaattgaacgagagctacatgacaaggtatctagtgtgatgaggaagtatatcatttgtatttagt--tactctggtgctc-tgtataaaaagaaaatg |
48967702 |
T |
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| Q |
118 |
tattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaaac-------attgatag |
210 |
Q |
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| T |
48967701 |
tactaattattgttattatttcaggaaagaacattggaagaacacaaaaagttggttgatagagttatgaagcgtgacaaaaaacgacgtaaaaagatag |
48967602 |
T |
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| Q |
211 |
aggctgctggcattgattatgagtgtccccagattgtgagccttttt-gcctttcttttactgattagttgttttcattgtccat |
294 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||| || |||||| |
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| T |
48967601 |
aggctgctggcattgattatgaatgtcctgagattgtgagcttttttcgcctttctttgactgattagttgttttgatagtccat |
48967517 |
T |
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