View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_low_26 (Length: 288)

Name: NF12637_low_26
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_low_26
NF12637_low_26
[»] chr2 (4 HSPs)
chr2 (16-279)||(26568191-26568454)
chr2 (46-125)||(5900532-5900611)
chr2 (69-120)||(43633444-43633495)
chr2 (77-117)||(2341338-2341378)
[»] chr1 (11 HSPs)
chr1 (16-268)||(43014314-43014567)
chr1 (16-127)||(45316399-45316510)
chr1 (69-127)||(10542397-10542455)
chr1 (29-127)||(42202390-42202488)
chr1 (29-127)||(42211258-42211356)
chr1 (69-132)||(42217273-42217336)
chr1 (69-123)||(42409606-42409660)
chr1 (69-127)||(45151998-45152056)
chr1 (69-112)||(2176357-2176400)
chr1 (73-123)||(42417650-42417700)
chr1 (75-125)||(51795024-51795074)
[»] chr3 (3 HSPs)
chr3 (29-136)||(21884057-21884164)
chr3 (69-132)||(46446214-46446277)
chr3 (23-136)||(35717197-35717311)
[»] chr4 (6 HSPs)
chr4 (29-127)||(17889427-17889525)
chr4 (46-125)||(49588172-49588251)
chr4 (31-119)||(36790848-36790936)
chr4 (69-123)||(25698817-25698871)
chr4 (36-112)||(46362507-46362583)
chr4 (78-113)||(20918690-20918725)
[»] chr5 (13 HSPs)
chr5 (22-136)||(10209727-10209841)
chr5 (16-123)||(10102813-10102920)
chr5 (69-127)||(10105893-10105951)
chr5 (69-127)||(10109306-10109364)
chr5 (69-127)||(10212325-10212383)
chr5 (69-127)||(13856021-13856079)
chr5 (73-139)||(3467667-3467733)
chr5 (77-127)||(37278735-37278785)
chr5 (69-126)||(9674763-9674820)
chr5 (80-132)||(12104608-12104660)
chr5 (69-120)||(12109391-12109442)
chr5 (69-127)||(9660280-9660338)
chr5 (73-123)||(10215928-10215978)
[»] chr7 (6 HSPs)
chr7 (31-127)||(3647031-3647127)
chr7 (60-123)||(3649484-3649547)
chr7 (69-123)||(3657601-3657655)
chr7 (74-127)||(3641211-3641264)
chr7 (80-122)||(33270836-33270878)
chr7 (69-133)||(19523284-19523348)
[»] chr8 (5 HSPs)
chr8 (69-136)||(31555170-31555237)
chr8 (69-132)||(31558255-31558318)
chr8 (69-136)||(31878232-31878299)
chr8 (74-139)||(4042245-4042310)
chr8 (78-125)||(13568429-13568476)
[»] chr6 (1 HSPs)
chr6 (69-125)||(33891599-33891655)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 26568454 - 26568191
Alignment:
Q  16 tcaattaagagagctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgct 115  Q
    ||||| ||||||||||||||||||||||  ||||||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  26568454 tcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcaaaagaatagttcgctatgtgct 26568355  T
Q  116 catcacacggctgcatgatttgaaatgagagaagtcctctcattatataatgttaataacacagttctgtttgtaaactagtcgatgtgggatttaaaca 215  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  26568354 catcacacagctgcatggtttgaaatgagagaagtcctctcattatataatgttaataacacacttctgtttgtgttctagtcgatgtgggatttaaaca 26568255  T
Q  216 gcacatacacatactaatacccaaattaccaaccccttctgttaatttcttgtatcacctatgc 279  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26568254 gcacattcacatactaatacccaaattaccaaccccttctgttaatttcttgtatcacctatgc 26568191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 5900611 - 5900532
Alignment:
Q  46 gtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacgg 125  Q
    |||| |||||||||||||  || |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  5900611 gtataccgcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacgg 5900532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 43633444 - 43633495
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatca 120  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  43633444 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgctcatca 43633495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 2341338 - 2341378
Alignment:
Q  77 ttctttagtaaaaggcgaaagaatagttcgctatgtgctca 117  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctca 2341378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 43014314 - 43014567
Alignment:
Q  16 tcaattaagagagctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgct 115  Q
    ||||| ||||||||||||||||||||||| |||||||| |  |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  43014314 tcaatcaagagagctctttcaaaaattaacgtatgccgttataagtgacgcacacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgct 43014413  T
Q  116 catcacacggctgcatgatttgaaatgagagaagtcctctcattatataatgttaataacacagttctgtttgtaaactagtcgatgtgggatttaaaca 215  Q
    |||||||||||| | ||||||| ||  |  |||||||| ||||| ||||||||||  ||| || || | |||  ||||||||||||||||| | || |||    
T  43014414 catcacacggctccgtgatttgtaacaaatgaagtcctttcattttataatgttagcaactcacttttatttacaaactagtcgatgtgggctatagaca 43014513  T
Q  216 gcacatacacatac--taatacccaaattaccaaccccttctgttaatttcttgt 268  Q
    | |||||| ||  |  ||||| |||| ||||||||||||| ||||||||||||||    
T  43014514 gaacatacgcacgctataata-ccaagttaccaaccccttatgttaatttcttgt 43014567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 45316399 - 45316510
Alignment:
Q  16 tcaattaagagagctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgct 115  Q
    ||||||||||| |||||| |||||| ||| |||||||| | ||||||| |   ||||||||||||||||||||||||||||||||||||||||||||  |    
T  45316399 tcaattaagagggctcttccaaaaactaacgtatgccgttaaaagtgacgttgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcat 45316498  T
Q  116 catcacacggct 127  Q
    ||||||||||||    
T  45316499 catcacacggct 45316510  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 10542455 - 10542397
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10542455 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10542397  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 42202390 - 42202488
Alignment:
Q  29 ctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    ||||| |||||| ||  |||||||||| || |||| ||  ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  42202390 ctcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggct 42202488  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 42211258 - 42211356
Alignment:
Q  29 ctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    ||||| |||||| ||  |||||||||| || |||| ||  ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  42211258 ctcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggct 42211356  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 42217273 - 42217336
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatg 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  42217273 acacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatg 42217336  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 42409660 - 42409606
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacac 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  42409660 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 42409606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 45152056 - 45151998
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  45152056 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacggct 45151998  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 2176357 - 2176400
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2176357 acacggtattctttagtaaaaggcgaaagaatagttcgctatgt 2176400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 42417700 - 42417650
Alignment:
Q  73 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacac 123  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacac 42417650  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 51795074 - 51795024
Alignment:
Q  75 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacgg 125  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||||||    
T  51795074 tattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcacacgg 51795024  T

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Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 21884057 - 21884164
Alignment:
Q  29 ctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctg 128  Q
    |||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21884057 ctctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctc 21884156  T
Q  129 catgattt 136  Q
    | ||||||    
T  21884157 cgtgattt 21884164  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 46446277 - 46446214
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||||    
T  46446277 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaaggctccatg 46446214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 35717197 - 35717311
Alignment:
Q  23 agagagctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattcttt-agtaaaaggcgaaagaatagttcgctatgtgctcatcac 121  Q
    |||||||||||| |||||| | ||||||| |||  ||||||| || | | |||||| ||| |||||||| ||||| ||||||| ||||||||||||||||    
T  35717197 agagagctctttaaaaaataagtgtatgctgctataagtgatacgcatatggtatttttttagtaaaagacgaaataatagtttgctatgtgctcatcac 35717296  T
Q  122 acggctgcatgattt 136  Q
    |||||| ||||||||    
T  35717297 acggcttcatgattt 35717311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 17889525 - 17889427
Alignment:
Q  29 ctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    |||||||||||||||  |||||||||||  ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17889525 ctctttcaaaaattagcgtatgccgcttttagtgacgtgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 17889427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 49588172 - 49588251
Alignment:
Q  46 gtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacgg 125  Q
    |||| |||||||||||||  || |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  49588172 gtataccgcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacgg 49588251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 36790936 - 36790848
Alignment:
Q  31 ctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatc 119  Q
    |||| ||||||||  |||||| |||| ||| || ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36790936 ctttaaaaaattatcgtatgctgctttaagcgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 36790848  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 25698871 - 25698817
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacac 123  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||    
T  25698871 acacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacac 25698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 46362507 - 46362583
Alignment:
Q  36 aaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgt 112  Q
    ||||| ||| |||| ||||| || |||||||  ||| ||||||||||||||||| |||||| |||||||||||||||    
T  46362507 aaaaactaacgtataccgctaaatgtgatgctgacatggtattctttagtaaaaagcgaaataatagttcgctatgt 46362583  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 20918725 - 20918690
Alignment:
Q  78 tctttagtaaaaggcgaaagaatagttcgctatgtg 113  Q
    ||||||||||||||||||||||||||| ||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtg 20918690  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 10209727 - 10209841
Alignment:
Q  22 aagagagctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcac 121  Q
    |||||| ||||| |||||| ||| ||||||| || |  |||| ||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10209727 aagagaactcttccaaaaactaacgtatgccactcattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcac 10209826  T
Q  122 acggctgcatgattt 136  Q
    |||||| | ||||||    
T  10209827 acggctccgtgattt 10209841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 10102920 - 10102813
Alignment:
Q  16 tcaattaagagagctctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgct 115  Q
    ||||| |||||  ||||| |||||| || ||||||||||| |  |||| ||  ||||||||||||||||||||||||||||||||||||||||||||| |    
T  10102920 tcaatgaagaggactcttccaaaaactagtgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 10102821  T
Q  116 catcacac 123  Q
    ||||||||    
T  10102820 catcacac 10102813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 10105951 - 10105893
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10105951 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10105893  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 10109364 - 10109306
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10109364 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10109306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 10212325 - 10212383
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10212325 acacagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10212383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 13856079 - 13856021
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  13856079 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggct 13856021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 3467667 - 3467733
Alignment:
Q  73 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatgatttgaa 139  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| ||| |||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtgaattgaa 3467733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 37278735 - 37278785
Alignment:
Q  77 ttctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggct 37278785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 9674763 - 9674820
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggc 126  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggc 9674820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 12104608 - 12104660
Alignment:
Q  80 tttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatg 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 12104660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 12109391 - 12109442
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatca 120  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  12109391 acacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatca 12109442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 9660280 - 9660338
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||    
T  9660280 acacagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatcacaaggct 9660338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 10215928 - 10215978
Alignment:
Q  73 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacac 123  Q
    |||||||||||||||||||| |||||||||||  ||||||| ||| |||||    
T  10215928 ggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacac 10215978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 3647127 - 3647031
Alignment:
Q  31 ctttcaaaaattaatgtatgccgcttaaagtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    |||||||||| || ||||||||||| | ||||| ||  |||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  3647127 ctttcaaaaactagtgtatgccgctaatagtgacgctgacacggtattctttagtaaaaggcgaaagaatagtttgctatgtcatcatcacacggct 3647031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 3649547 - 3649484
Alignment:
Q  60 gtgatgcgtacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacac 123  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3649547 gtgatgctaacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3649484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 3657655 - 3657601
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacac 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3657655 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 3641264 - 3641211
Alignment:
Q  74 gtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 127  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 33270878 - 33270836
Alignment:
Q  80 tttagtaaaaggcgaaagaatagttcgctatgtgctcatcaca 122  Q
    |||||||||||||||||||||||| |||| ||| |||||||||    
T  33270878 tttagtaaaaggcgaaagaatagtccgctttgtactcatcaca 33270836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 19523284 - 19523348
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatga 133  Q
    |||||| |||||||||||||||||||||||||  |||||| |||| | |  || |||||||||||    
T  19523284 acacggaattctttagtaaaaggcgaaagaattattcgctctgtgattacaacgcggctgcatga 19523348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 31555170 - 31555237
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatgattt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  31555170 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgattt 31555237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 31558255 - 31558318
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  31558255 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 31558318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 31878299 - 31878232
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatgattt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  31878299 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgattt 31878232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 4042245 - 4042310
Alignment:
Q  74 gtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctgcatgatttgaa 139  Q
    |||||||||||| |||||||||||||||||| ||| || ||||||||||||||||| ||| |||||    
T  4042245 gtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtgaattgaa 4042310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 13568429 - 13568476
Alignment:
Q  78 tctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacgg 125  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacgg 13568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 33891655 - 33891599
Alignment:
Q  69 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacgg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33891655 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacgg 33891599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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