View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_28 (Length: 277)
Name: NF12637_low_28
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 138 - 260
Target Start/End: Complemental strand, 2249596 - 2249474
Alignment:
| Q |
138 |
ctctacctgaagagcaagaactccacaataagcaaagaaatattcaagccatttaggaagcttaaaacttctatgagaaagatttctatggaaagaagtt |
237 |
Q |
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| T |
2249596 |
ctctacctgaagagcaagaactccacaataagcaaagaaatattcaagccatttaggaagcttaaaacttctatgagaaagatttctatggaaagaagtt |
2249497 |
T |
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| Q |
238 |
gttattccaaacaatccagtaac |
260 |
Q |
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||||||||||||||||||||||| |
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| T |
2249496 |
gttattccaaacaatccagtaac |
2249474 |
T |
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Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 2249756 - 2249625
Alignment:
| Q |
1 |
ccaaccgtggagattctaaatgcggttgggacactatataaagtctatctcacactcattg------------acttcaactacatttaataatctccaa |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2249756 |
ccaaccgtggagattctaaatgcggttgggacactatataaagtctatctcacactcattgtaatcctaaccaacttcaactacatttaataatctccaa |
2249657 |
T |
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| Q |
89 |
cgaattccaacaacagacacaaaattgaatgc |
120 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2249656 |
cgaattccaacaacagacacaaaattgaatgc |
2249625 |
T |
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