View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_3 (Length: 547)
Name: NF12637_low_3
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 26 - 529
Target Start/End: Original strand, 28093736 - 28094242
Alignment:
| Q |
26 |
ggaaggggattacattcaattaattcatttttccaaatgctatgggtgccgaagtgtcttggtcaatgtcgcgttcagtattcgtgtttgcaccaatggt |
125 |
Q |
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| T |
28093736 |
ggaagaggattacattcaattaattcatttttccaaatgctatgggtgccgaagtgtcttggtcaatgtcacgttcagtattcgtgtttgcaccaatggt |
28093835 |
T |
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| Q |
126 |
tcatagactctgcccccaacatccatcaagtctatttggttaaagcacttttgtcacatttcatcatagatacgcattcaaccggagcaaatgtgaaggg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28093836 |
tcatagactctgcccccaacatccatcaagtctatttggttaaagcacttttgtcacatttcatcatagatacgcattcaaccggagcaaatgtgaaggg |
28093935 |
T |
|
| Q |
226 |
gattcaaaatataaactt---aaatgtggtattgttgcattacaatattacataaagaggattttgatagatgtctaataatctatcaacattttatttt |
322 |
Q |
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| T |
28093936 |
gattcaaaatataatctatcaacattttattttgttgcattacaatattacataaagaggattttgatagatgtctaataatctatcaacattttatttt |
28094035 |
T |
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| Q |
323 |
gctttctgttaagcatgaagagtgttagtgtggctaattttttcatggaatgtttaattgacccttttattctagtaacctctatttccaacaaatgcat |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094036 |
gctttctgttaagcatgaagagtgttagtgtggctaattttttcatggaatgtttaattgacccttttattctagtaacctctatttccaacaaatgcat |
28094135 |
T |
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| Q |
423 |
gcatgcaagaataaatatatatgcacaaatatgacaccacatcgcaaactgttgcttatatatacacaaacaatcaaacacaatacataataattgattc |
522 |
Q |
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| T |
28094136 |
gcatgcaagaataaatatatatgcacaaatatgacaccacatcgcaaactgttgcttatatatacacaaacaatcaaacacaatacataataattgattc |
28094235 |
T |
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| Q |
523 |
atgcttt |
529 |
Q |
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||||||| |
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| T |
28094236 |
atgcttt |
28094242 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 41330341 - 41330312
Alignment:
| Q |
34 |
attacattcaattaattcatttttccaaat |
63 |
Q |
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| T |
41330341 |
attacattcaattaattcatttttccaaat |
41330312 |
T |
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