View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12637_low_30 (Length: 262)
Name: NF12637_low_30
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 922953 - 923069
Alignment:
| Q |
135 |
gttgttcactccaaataagggatcgcaatatgttagagaaaagtatgtcttgaccttgtgcgtgacccaagattgct---agccaaacccgctaaaacac |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
922953 |
gttgttcactccaaataagggatcgcaatatgttagagaaaagtatatcttgaccttgtgcgcgacccaagattgctatgagccaaacccgctaaaacac |
923052 |
T |
|
| Q |
232 |
ctcttgatccttctgtg |
248 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
923053 |
ctcttgatccttctgtg |
923069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 922834 - 922889
Alignment:
| Q |
16 |
caaaaatatgttttgatctatgaaagatggacttagactcagacatttacacacgg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
922834 |
caaaaatatgttttgatctatgaaagatggacttagactcagacatttacacacgg |
922889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University